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Recent Replies
Answer: Korean reference file
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colindaven
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Is is this one - KOREF ? There might be multiple versions. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA294231/
If it is, then take that…
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The question is not quite clear? are you asking for wheat proteins in UniProtKB which contain a lysine amino-acid, where those lysine are *…
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You should provide row count (without normalization) for doing DEG analysis by relevant tools such as, edgeR or DEseq.
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Thank you.
I have another question. Is there a way to get the gene list under "setSize" from the output that you gave as an example.
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Hi, i have added the fastqc plots (untrimmed and trimmed). The sample was from anaerobes enriched from wastewater treatment plant, and this…
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> lysine non-acetylated sequences
what does it look like in uniprot ? give us an example with a uniprot identifier.
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thank you for responding.
I was looking for suitable variant calling tool. I'm working on fungus and I don't have fast5 files.
Could you re…
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Hi LChart,
Thanks for your reply. I see S-mode in the CIBERSORTx official website tutorial(https://cibersortx.stanford.edu/), and the imag…
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First time I've heard of S-mode. I imagine you've seen this benchmark where it doesn't come out too well: https://academic.oup.com/bib/arti…
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https://res.saletool.cn/vcf/18084521725806
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https://res.saletool.cn/vcf/18084435127462
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I want to conduct GWAS meta-analysis using metal software.
Comment: How to reduce the variation of CIBERSORTx results?
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Hi LChart,
Thanks for your reply. Yes, the identical command lines produce different results in CIBERSORTx S-mode. Although I input the da…
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I *could* imagine an ONT scenario where you'd want to remove duplicates (amplicon-seq, etc) but likely for variant calling there is no need…
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