User: wmorgan485

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wmorgan4850
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Posts by wmorgan485

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Comment: C: Downloading individual reads from SRA
... I got an error message due to the missing parameter for the fasta option. I give a corrected example here: https://www.biostars.org/p/474282/#474415 ...
written 6 days ago by wmorgan4850
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Comment: C: How to retrieve an individual read with fastq-dump
... Thanks! I should have said in my initial post that I had already seen the "Downloading individual reads from SRA" post and given it a try without success. Surprisingly, when I use the example command in that post (modified here to include the missing parameter for the --fasta option), no file is ret ...
written 14 days ago by wmorgan4850
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How to retrieve an individual read with fastq-dump
... After performing a blastn search against an SRA accession, I want to retrieve several dozen matching reads using SRA Toolkit. As a test, I tried this command to get one of the matching reads: fastq-dump --split-spot SRR10201511.86616936.2 The expected result was a fastq file like this: ...
sra fastq-dump rna-seq written 15 days ago by wmorgan4850

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