User: o.omidan
o.omidan • 10
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Posts by o.omidan
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... I pass SRR5122422 as argument to script
./myscript.sh SRR5122422 ...
written 8 weeks ago by
o.omidan • 10
1
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... ok . it work after I edit like this
CMD="${PYTHON_EXE} -m HTSeq.scripts.count -i gene_name -r name ${1}_sort.sam ${ANNOT_PATH} "
echo Running $CMD
if $CMD >${COUNT_PATH}${1}.count; then
echo "${GREEN}Counting done${NC}"
else
echo "${RED}Counting failed; ...
written 8 weeks ago by
o.omidan • 10
0
votes
1
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158
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... if I copy and past the generated command in console it run without any error. so I think file is ok ...
written 8 weeks ago by
o.omidan • 10
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... Hi
I write an bash script to automate my workflow. but the count section not work and throw this error. I can not figure it out why exact same command run from console is ok but has error in script
CMD="${PYTHON_EXE} -m HTSeq.scripts.count -i gene_name -r name ${1}_sort.sam ${ANNOT_PATH} >${ ...
written 8 weeks ago by
o.omidan • 10
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