User: o.omidan

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o.omidan10
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Posts by o.omidan

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Comment: C: problem use htseq-count in bash script
... I pass SRR5122422 as argument to script ./myscript.sh SRR5122422 ...
written 8 weeks ago by o.omidan10
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Answer: A: problem use htseq-count in bash script
... ok . it work after I edit like this CMD="${PYTHON_EXE} -m HTSeq.scripts.count -i gene_name -r name ${1}_sort.sam ${ANNOT_PATH} " echo Running $CMD if $CMD >${COUNT_PATH}${1}.count; then echo "${GREEN}Counting done${NC}" else echo "${RED}Counting failed; ...
written 8 weeks ago by o.omidan10
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Comment: C: problem use htseq-count in bash script
... if I copy and past the generated command in console it run without any error. so I think file is ok ...
written 8 weeks ago by o.omidan10
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problem use htseq-count in bash script
... Hi I write an bash script to automate my workflow. but the count section not work and throw this error. I can not figure it out why exact same command run from console is ok but has error in script CMD="${PYTHON_EXE} -m HTSeq.scripts.count -i gene_name -r name ${1}_sort.sam ${ANNOT_PATH} >${ ...
htseq-count script written 8 weeks ago by o.omidan10

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