User: sanchezcavani

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sanchezcavani210
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Posts by sanchezcavani

<prev • 48 results • page 1 of 5 • next >
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Figure with gene synteny crosslinks
... I plan to draw a gene synteny figure with crosslinks like the following figure. Is there an easy way to make it?   http://people.rennes.inria.fr/Claire.Lemaitre/images/methodo.png     ...
genome gene alignment written 5.0 years ago by sanchezcavani210
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Comment: C: Any Software To Do Multiple Genome Alignment For Bacterial Genomes?
... Thanks for your suggestions. SyMap seems to be a good aligner. ...
written 5.6 years ago by sanchezcavani210
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Comment: C: Any Software To Do Multiple Genome Alignment For Bacterial Genomes?
... Thanks so much for your helpful suggestions for many nice resources! ...
written 5.6 years ago by sanchezcavani210
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Any Software To Do Multiple Genome Alignment For Bacterial Genomes?
... I need to do some staff on genome alignment of a few bacterial genomes to detect some conserved genes with synteny among them. However, since some of them have diverged for a long time (probably up to about 1 billion years), many software that are available may not work properly (mainly designed for ...
bacteria alignment written 5.6 years ago by sanchezcavani210 • updated 5.6 years ago by Josh Herr5.7k
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Comment: C: Sporadic Distribution Of A Gene On A Phylogenetic Tree
... Sorry , forgetting to mention that ML was applied to build the tree so that the effect of LBA should be minimized. ...
written 5.7 years ago by sanchezcavani210
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Comment: C: Sporadic Distribution Of A Gene On A Phylogenetic Tree
... Thanks a lot for your comments! The gene phylogeny is quite different from species tree. Several distanly related species are grouped together and form an independent clade (not group together with the species where the gene is mostly found). Basically the branch length of the genes from distantly r ...
written 5.7 years ago by sanchezcavani210
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Comment: C: Package For Genomediagram?
... Sure. Thanks for reminding! ...
written 5.7 years ago by sanchezcavani210
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Comment: C: Package For Genomediagram?
... Thanks! I have got it. ...
written 5.7 years ago by sanchezcavani210
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Answer: A: User Manual For Genomediagram
... enter link description here You need to have a look here since it works finely whereas older versions of the manual may not fit biopython well. ...
written 5.7 years ago by sanchezcavani210
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Answer: A: Finding Common Motifs In Sequences
... I would recommend to use [MEME][1]. [1]: http://meme.nbcr.net/meme/doc/overview.html ...
written 5.7 years ago by sanchezcavani210 • updated 21 days ago by RamRS24k

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