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4
votes
5
replies
7.8k
views
Identify short repeats in DNA sequence?
blast
updated 3.3 years ago by 45k • written 10.7 years ago by ▴ 520
5
votes
3
replies
5.8k
views
What Causes The Bwa Error: "Assertion `Re - Rb == Rlen' Failed."
bwa
updated 6.0 years ago by ▴ 10 • written 11.7 years ago by ▴ 520
0
votes
1
reply
1.2k
views
High FPKM values for bacterial genes
rna-seq
updated 6.5 years ago by 20 • written 7.8 years ago by ▴ 520
1
vote
3
replies
2.6k
views
How to get multiple alignments from different species using lastz?
alignment
updated 6.7 years ago by 20 • written 8.6 years ago by ▴ 520
0
votes
1
reply
1.9k
views
How to visualize a tree with ancestral state information
gene
updated 7.0 years ago by ★ 1.7k • written 7.0 years ago by ▴ 520
4
votes
3
replies
3.7k
views
Why do ribo-seq sequencing data have only a small proportion of uniquely mapped reads?
ribo-seq RNA-Seq
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by ▴ 520
3
votes
2
replies
1.8k
views
Automatic functional annotation of protein sequences
blast genome gene protein annotation
updated 7.7 years ago by 5.9k • written 7.7 years ago by ▴ 520
3
votes
2
replies
2.5k
views
Alignment Based Secondary Structure Prediction
rna structure
updated 7.8 years ago by ▴ 20 • written 11.8 years ago by ▴ 520
9
votes
13
replies
3.3k
views
How to abbreviate species name?
gene
7.8 years ago by Cacau ▴ 520
1
vote
2
replies
2.0k
views
How to deal with single reads from PE reads after trimming?
RNA-Seq alignment ChIP-Seq
updated 8.1 years ago by 20 • written 10.4 years ago by ▴ 520
37
votes
10
replies
27k
views
8 follow
How can I change the default path to which SRA files are downloaded?
RNA-Seq
updated 2.6 years ago by 45k • written 9.6 years ago by ▴ 520
0
votes
0
replies
1.3k
views
Phylogenetic construction with short motif
sequence alignment
8.4 years ago by Cacau ▴ 520
4
votes
4
replies
14k
views
Strategies To Blast Against Fastq Files
fastq blast
updated 8.4 years ago by • 0 • written 11.5 years ago by ▴ 520
0
votes
4
replies
1.8k
views
Is there a way to extract sites that are perfectly aligned to the reference genome in maf format?
alignment
8.7 years ago by Cacau ▴ 520
1
vote
2
replies
1.3k
views
Why is the first nucleotide of a codon more enriched in ribo-seq reads?
sequencing
updated 8.8 years ago by ★ 2.2k • written 8.8 years ago by ▴ 520
0
votes
1
reply
1.7k
views
How to deal with lastz duplicated results
alignment genome
8.8 years ago by Cacau ▴ 520
0
votes
3
replies
1.8k
views
Transcriptome assembly if adaptors are not well removed
rna-seq Assembly
updated 8.9 years ago by 47k • written 8.9 years ago by ▴ 520
0
votes
1
reply
1.2k
views
How many reads on average mapped to each nucleotide are needed to support the identification of a new transcript using cufflinks?
RNA-Seq
8.9 years ago by Cacau ▴ 520
7
votes
8
replies
5.1k
views
Question About Coloring Alignment File
alignment
updated 8.9 years ago by ▴ 100 • written 11.7 years ago by ▴ 520
0
votes
1
reply
2.0k
views
Identifying intron and exon structure for genes using RNA-seq data
RNA-Seq Assembly
9.0 years ago by Cacau ▴ 520
1
vote
3
replies
1.7k
views
reads from miRNA-seq
rna-seq
updated 9.0 years ago by ★ 1.2k • written 9.0 years ago by ▴ 520
4
votes
3
replies
1.8k
views
Identify new transcripts using non-sorted bam file?
rna-seq Assembly
updated 9.0 years ago by ★ 2.1k • written 9.0 years ago by ▴ 520
0
votes
3
replies
1.7k
views
Transcriptome assembly with variations among replicates
RNA-Seq rna-seq Assembly
9.1 years ago by Cacau ▴ 520
3
votes
3
replies
2.4k
views
non-strand-specific library for bs-seq
sequencing
updated 9.1 years ago by ★ 9.6k • written 9.5 years ago by ▴ 520
5
votes
8
replies
12k
views
Is There A Software With Gui That I Can Use To Draw A Phylogenetic Tree Based On The Topology I Want?
updated 9.4 years ago by ▴ 110 • written 11.6 years ago by ▴ 520
0
votes
1
reply
1.9k
views
Infer the number of genes in the ancestral states
gene
updated 2.3 years ago by 45k • written 9.9 years ago by ▴ 520
27
votes
14
replies
6.9k
views
10 follow
Free Linux server for bio-computing?
sequence
updated 2.8 years ago by 45k • written 10.4 years ago by ▴ 520
6
votes
15
replies
9.2k
views
7 follow
How To Color A Multiple Sequence Alignment In Black-And-White
updated 10.4 years ago by 20 • written 11.5 years ago by ▴ 520
4
votes
7
replies
4.2k
views
FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
RNA-Seq
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 520
4
votes
6
replies
3.3k
views
Could the information of Line 3 in fastq file be deleted?
next-gen RNA-Seq
updated 10.5 years ago by 6.0k • written 10.5 years ago by ▴ 520
1
vote
3
replies
2.2k
views
Which software should be used to get SNPs different from reference but same in all reads?
SNP
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 520
8
votes
8
replies
6.6k
views
What software could be used to calculate substitution rate of a pair of nucleic acid sequences?
alignment sequence
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 520
4
votes
2
replies
8.1k
views
Annotation Of Protein Functions?
updated 11.0 years ago by 20 • written 11.5 years ago by ▴ 520
3
votes
2
replies
3.0k
views
Can Anyone Send Me One Copy Of Maf-Convert.Py ?
updated 11.2 years ago by 20 • written 11.5 years ago by ▴ 520
0
votes
1
reply
4.3k
views
Limit The Memory Size Of Blast?
blast blast+
updated 11.5 years ago by ★ 2.6k • written 11.5 years ago by ▴ 520
9
votes
8
replies
9.7k
views
6 follow
How To Cluster Sequences Based On Blast Results?
clustering blast
updated 11.5 years ago by 4.1k • written 11.5 years ago by ▴ 520
1
vote
2
replies
1.9k
views
Can Tilling Array Be Used To Detect From Which Strand A Gene Is Transcribed?
transcription
updated 11.6 years ago by 11k • written 11.6 years ago by ▴ 520
1
vote
1
reply
4.4k
views
Which Software Can Be Used To Build Nj Tree With Gtr+I+G Model?
phylogeny tree
updated 11.6 years ago by ★ 3.0k • written 11.6 years ago by ▴ 520
0
votes
2
replies
8.1k
views
How To Interpret Omega Value 999 In Paml Results?
paml
updated 11.6 years ago by ★ 3.0k • written 11.6 years ago by ▴ 520
1
vote
2
replies
5.6k
views
Question About How To Draw A Phylogenetic Tree With Gradual Change Of Color
phylogeny
updated 11.6 years ago by 4.9k • written 11.6 years ago by ▴ 520
1
vote
3
replies
2.5k
views
How Should I Show Taxonomy Phylogeny In My Paper?
phylogeny taxonomy
updated 11.6 years ago by 5.8k • written 11.6 years ago by ▴ 520
3
votes
4
replies
2.3k
views
Confirming Sequences In Specific Regions Of Interest
ngs assembly
updated 11.7 years ago by ★ 1.6k • written 11.7 years ago by ▴ 520
4
votes
2
replies
2.4k
views
How To Generate Gene Duplication Figure?
updated 11.7 years ago by 3.5k • written 11.7 years ago by ▴ 520
2
votes
3
replies
12k
views
Consensus Tree Vs Best Tree?
phylogenetics
updated 11.8 years ago by 4.9k • written 11.8 years ago by ▴ 520
0
votes
3
replies
2.0k
views
Transposon Scan?
updated 11.8 years ago by ▴ 90 • written 11.8 years ago by ▴ 520
6
votes
6
replies
3.3k
views
Method Of Getting Progress Of A Blast Run
blast
updated 11.8 years ago by 49k • written 11.8 years ago by ▴ 520
9
votes
2
replies
2.5k
views
Can Paml Be Applied To Comparison Between Distantly Related Organisms?
paml
updated 11.8 years ago by ★ 3.6k • written 11.8 years ago by ▴ 520
47 results • Page 1 of 1
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