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16
votes
3
replies
11k
views
Tool: Vcflib Documentation
vcf
updated 10 months ago by 43k • written 11.1 years ago by ★ 2.4k
3
votes
1
reply
4.0k
views
Answer: A: How To Represent Two Different Indels At The Same Position In A Multisample Vcf?
updated 4.3 years ago by 43k • written 10.5 years ago by ★ 2.4k
0
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0
replies
3.9k
views
Answer: A: Unmerge Vcfs
updated 4.3 years ago by 43k • written 10.6 years ago by ★ 2.4k
1
vote
0
replies
2.8k
views
Answer: A: Gatk Ouput : Duplication On Same Position
updated 4.3 years ago by 43k • written 10.6 years ago by ★ 2.4k
3
votes
1
reply
14k
views
Answer: A: Indel Left/Right Alignment
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.4k
3
votes
0
replies
2.2k
views
Answer: Answer: Easy to use local assembly programs ?
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.4k
9
votes
1
reply
19k
views
Answer: A: Comparing Genotypes In Two Vcf Files
updated 4.5 years ago by 43k • written 11.3 years ago by ★ 2.4k
1
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0
replies
4.0k
views
Answer: A: Snps And Indels In Homozygous Genomes
updated 4.5 years ago by 43k • written 11.3 years ago by ★ 2.4k
0
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0
replies
30k
views
Comment: C: C/C++ Libraries For Bioinformatics?
updated 4.6 years ago by 43k • written 13.5 years ago by ★ 2.4k
0
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1
reply
1.9k
views
Comment: C: supporting vg users on biostars
4.6 years ago by Erik Garrison ★ 2.4k
8
votes
4
replies
1.9k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.4k
4
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0
replies
5.0k
views
Answer: A: Indel Detection For 454 Resequencing
updated 4.6 years ago by 43k • written 13.5 years ago by ★ 2.4k
23
votes
0
replies
179k
views
Answer: A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
updated 5.5 years ago by 43k • written 11.3 years ago by ★ 2.4k
33
votes
9
replies
31k
views
Answer: A: What Methods Do You Use For In/Del/Snp Calling?
updated 5.6 years ago by 43k • written 13.5 years ago by ★ 2.4k
0
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0
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2.4k
views
Comment: C: Does The Vcffilter Tool Work On String Type Info Tags?
9.6 years ago by Erik Garrison ★ 2.4k
1
vote
0
replies
8.5k
views
Answer: A: Get Insertion / Deletion Count From Vcf
10.4 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
16k
views
Comment: C: Gatk - Haplotypecaller Is So Slow, What Is Faster And As Good?
10.4 years ago by Erik Garrison ★ 2.4k
20
votes
2
replies
21k
views
Answer: A: Filters/Quality For Vcf Generated By Freebayes
10.4 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
7.3k
views
Comment: C: What License Do You Use When You Release Code And Data?
10.4 years ago by Erik Garrison ★ 2.4k
2
votes
0
replies
14k
views
Answer: A: How To Get A List Of All Correlated Snps (In Ld) With Another List Of Snps?
10.4 years ago by Erik Garrison ★ 2.4k
2
votes
0
replies
5.3k
views
Answer: A: Snp Calling Of Tcga Data Using Samtools
10.4 years ago by Erik Garrison ★ 2.4k
2
votes
0
replies
37k
views
Comment: C: Best Software For Detection Of Somatic Mutations From Matched Tumor:Normal Ngs D
10.4 years ago by Erik Garrison ★ 2.4k
0
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0
replies
16k
views
Comment: C: Error: Eof Marker Is Absent When Processing A Bam File
10.4 years ago by Erik Garrison ★ 2.4k
0
votes
1
reply
6.7k
views
Answer: A: Bam To Bed With Read Nucleotide Sequences
10.4 years ago by Erik Garrison ★ 2.4k
3
votes
1
reply
4.0k
views
Answer: A: Variant Calling From Single Cell Sequencing Data?
10.4 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
31k
views
Comment: C: What Methods Do You Use For In/Del/Snp Calling?
10.4 years ago by Erik Garrison ★ 2.4k
0
votes
2
replies
18k
views
Comment: C: Sample Sam File
10.5 years ago by Erik Garrison ★ 2.4k
0
votes
1
reply
16k
views
Comment: C: Gatk - Haplotypecaller Is So Slow, What Is Faster And As Good?
10.5 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
3.7k
views
Comment: C: Local Realignment And Local De Novo Assembly Software
10.5 years ago by Erik Garrison ★ 2.4k
3
votes
0
replies
5.7k
views
Answer: A: Massive Snp Calling From Hundreds Of Bacterial Genomes
10.5 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
11k
views
Comment: C: Understanding Vcf Output From Mpileup
10.5 years ago by Erik Garrison ★ 2.4k
3
votes
0
replies
4.6k
views
Answer: A: Freebayes And Mpileup Filtering Query
10.8 years ago by Erik Garrison ★ 2.4k
1
vote
0
replies
16k
views
Answer: A: Vcftools: Filtering By Multiple Regions (--Positions Flag?)
11.0 years ago by Erik Garrison ★ 2.4k
18
votes
3
replies
94k
views
Answer: A: Best Way To Merge A Many Thousand Small Bam Files Into One Big Bam File?
11.0 years ago by Erik Garrison ★ 2.4k
0
votes
1
reply
6.9k
views
Comment: C: Short Read Aligners/ Snp Calling Comparison
11.2 years ago by Erik Garrison ★ 2.4k
1
vote
0
replies
10k
views
Answer: A: How To Detect And Query Poly-Allelic Snps?
11.2 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
18k
views
Comment: C: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Thresh
11.2 years ago by Erik Garrison ★ 2.4k
1
vote
0
replies
3.0k
views
Answer: A: Concern On Tumor Samples With Mixed Cell Population
11.2 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
31k
views
Comment: C: What Methods Do You Use For In/Del/Snp Calling?
11.2 years ago by Erik Garrison ★ 2.4k
3
votes
0
replies
2.7k
views
Answer: A: Predicting Biologically Significant Snps
11.3 years ago by Erik Garrison ★ 2.4k
4
votes
0
replies
5.5k
views
Answer: A: Haloplex & Allele Calling
11.3 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
4.6k
views
Comment: C: Vcf - Showing Data For Non-Variant Positions As Well As Snps
11.3 years ago by Erik Garrison ★ 2.4k
1
vote
0
replies
13k
views
Comment: C: Best Practice On Variant Discovery For Bacteria?
11.3 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
3.0k
views
Comment: C: Searching For A Common Pattern In A Set Of Dna Sequences
11.3 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
3.7k
views
Answer: A: Are 1000G Snps Represented In Dbsnp?
11.3 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
8.7k
views
Answer: A: Vcf Format And Filtering
11.3 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
4.4k
views
Comment: C: How To Detect Overlaping Indels In Vcf File?
11.3 years ago by Erik Garrison ★ 2.4k
7
votes
0
replies
6.2k
views
Answer: A: Vcf Programming Language Api'S / Parsers Available?
11.3 years ago by Erik Garrison ★ 2.4k
0
votes
0
replies
4.1k
views
Answer: A: Intronic Snp Functional Annotation
11.3 years ago by Erik Garrison ★ 2.4k
4
votes
0
replies
7.4k
views
Answer: A: Haplotype Calling
11.3 years ago by Erik Garrison ★ 2.4k
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