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When should I use R-MarkDown over R-Script ?
r rscript rmarkdown
updated 8 months ago by 86k • written 8 months ago by ▴ 180
0
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1
reply
565
views
mitch analysis report priority by standard deviation
mitch standard_deviation
updated 12 months ago by ★ 1.9k • written 2.1 years ago by ▴ 180
0
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1
reply
565
views
Can I perform ANOVA test on rlog data of RNA sequencing counts?
rlog ANOVA
updated 20 months ago by 3.8k • written 20 months ago by ▴ 180
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1
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1.3k
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Comment: Comment: What is the difference between vst and rlog to perform PCA ?
20 months ago by Amr ▴ 180
4
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3
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1.3k
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What is the difference between vst and rlog to perform PCA ?
rlog PCA vsd
updated 20 months ago by 86k • written 20 months ago by ▴ 180
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0
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1.4k
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Comment: Comment: t-test to check if the cancer samples are significantly different than the norma
20 months ago by Amr ▴ 180
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1
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1.4k
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Comment: Comment: t-test to check if the cancer samples are significantly different than the norma
20 months ago by Amr ▴ 180
0
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1
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1.4k
views
Comment: Comment: t-test to check if the cancer samples are significantly different than the norma
20 months ago by Amr ▴ 180
4
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6
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1.4k
views
t-test to check if the cancer samples are significantly different than the normal samples using R
t-test independent
20 months ago by Amr ▴ 180
0
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0
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2.5k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
24 months ago by Amr ▴ 180
6
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6
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2.5k
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What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's down and upregulated?
GSEA HALLMARK
24 months ago by Amr ▴ 180
0
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1
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2.5k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
24 months ago by Amr ▴ 180
1
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0
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417
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How can two contradicted gene sets be enriched in a cancer sample in GSEA analysis?
HALLMARK_UV_RESPONSE_UP GSEA
updated 24 months ago by 86k • written 24 months ago by ▴ 180
2
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1
reply
666
views
Why we check adjusted p-value not p-value to check whether we reject the null hypothesis or not in DESeq2?
p-value DESeq2
updated 24 months ago by 86k • written 24 months ago by ▴ 180
0
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0
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512
views
KEGG Pathway pathway in cancer
cancer KEGG
2.0 years ago by Amr ▴ 180
1
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2
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844
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Can I get the read length from the count data file in R? How?
read_length sequencing
updated 2.1 years ago by 11k • written 2.1 years ago by ▴ 180
0
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1
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1.2k
views
Comment: Comment: How to filter genes inside a normalized count data file based on p-adjust value?
2.1 years ago by Amr ▴ 180
0
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1
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1.2k
views
Comment: Comment: How to filter genes inside a normalized count data file based on p-adjust value?
2.1 years ago by Amr ▴ 180
0
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1
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1.2k
views
Comment: Comment: How to filter genes inside a normalized count data file based on p-adjust value?
2.1 years ago by Amr ▴ 180
0
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7
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1.2k
views
How to filter genes inside a normalized count data file based on p-adjust value?
normalization p-value DESeq2
updated 2.1 years ago by 44k • written 2.1 years ago by ▴ 180
0
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1
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1.4k
views
Comment: Comment: What is the difference between Frame shift ins mutation and In frame ins mutatio
2.1 years ago by Amr ▴ 180
0
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3
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1.4k
views
What is the difference between Frame shift ins mutation and In frame ins mutation?
mutation Frameshift DNA
updated 2.1 years ago by 44k • written 2.1 years ago by ▴ 180
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2
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2.1k
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Comment: Comment: How to connect with MobaXterm?
2.1 years ago by Amr ▴ 180
5
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7
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2.1k
views
6 follow
How to connect with MobaXterm?
login mobaxterm ssh offtopic
updated 2.1 years ago by 44k • written 2.1 years ago by ▴ 180
0
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0
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2.1k
views
Comment: Comment: How to connect with MobaXterm?
2.1 years ago by Amr ▴ 180
9
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19
replies
5.4k
views
6 follow
Relative frequencies of the nucleotides in Fasta files
fasta
updated 23 months ago by ▴ 140 • written 3.8 years ago by ▴ 180
0
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0
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1.2k
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Comment: Comment: How to plot the relative abundance of the most abundant genera?
2.2 years ago by Amr ▴ 180
0
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2
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1.2k
views
How to plot the relative abundance of the most abundant genera?
relative_abundance taxa.mean.plot mean_relative_abundance ggplot2 taxonomic R
2.2 years ago by Amr ▴ 180
0
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1
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1.1k
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Comment: Comment: How to clean taxonomy file for microbiome analysis in R?
2.2 years ago by Amr ▴ 180
0
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1
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1.1k
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Comment: Comment: How to clean taxonomy file for microbiome analysis in R?
2.2 years ago by Amr ▴ 180
3
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5
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1.1k
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How to clean taxonomy file for microbiome analysis in R?
taxonomy microbiome_analysis
2.2 years ago by Amr ▴ 180
0
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1
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947
views
Comment: Comment: How to visualize taxonomic data based on mean relative abundance?
2.2 years ago by Amr ▴ 180
0
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3
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947
views
How to visualize taxonomic data based on mean relative abundance?
relative_abundance taxa.mean.plot mean_relative_abundance ggplot2 taxonomic
updated 2.2 years ago by ▴ 930 • written 2.2 years ago by ▴ 180
0
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0
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450
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How to plot the relative abundance of the most abundant genera ? to visualize the taxonomic composition?
relative_abundance barchart abundance mean taxonomic
2.2 years ago by Amr ▴ 180
0
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0
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877
views
Comment: Comment: How to custom colors in plot_ordination?
2.2 years ago by Amr ▴ 180
0
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2
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877
views
How to custom colors in plot_ordination?
PCoA plot_ordination beta_diversity
2.2 years ago by Amr ▴ 180
0
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1
reply
1.3k
views
How to change colors in boxplot in R?
ggplot2 box-plot
updated 2.2 years ago by 44k • written 2.2 years ago by ▴ 180
2
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5
replies
3.4k
views
How to make alpha diversity boxplot?
alpha_diversity taxa ASV box_plot shannon
updated 16 months ago by • 0 • written 2.2 years ago by ▴ 180
0
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1
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3.4k
views
Comment: Comment: How to make alpha diversity boxplot?
2.2 years ago by Amr ▴ 180
0
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0
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3.1k
views
Comment: Comment: Error input data must be numeric in R, how to solve it?
2.2 years ago by Amr ▴ 180
0
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1
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3.1k
views
Comment: Comment: Error input data must be numeric in R, how to solve it?
2.2 years ago by Amr ▴ 180
4
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7
replies
3.1k
views
Error input data must be numeric in R, how to solve it?
error_numeric ASV_file R
2.2 years ago by Amr ▴ 180
0
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0
replies
3.1k
views
Comment: Comment: Error input data must be numeric in R, how to solve it?
2.2 years ago by Amr ▴ 180
0
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0
replies
3.1k
views
Comment: Comment: Error input data must be numeric in R, how to solve it?
2.2 years ago by Amr ▴ 180
0
votes
3
replies
1.5k
views
How to plot all enrichment plots from GSEA in one single plot in python or R?
R python ES GSEA
updated 2.1 years ago by 44k • written 2.2 years ago by ▴ 180
0
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0
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4.2k
views
Comment: Comment: Why we use adjusted p-value not p-value in differential gene expression analysis
2.2 years ago by Amr ▴ 180
4
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7
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4.2k
views
Why we use adjusted p-value not p-value in differential gene expression analysis ?
p-value adjusted-p-value DGE DESeq2
2.2 years ago by Amr ▴ 180
0
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0
replies
4.2k
views
Comment: Comment: Why we use adjusted p-value not p-value in differential gene expression analysis
2.2 years ago by Amr ▴ 180
0
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1
reply
4.2k
views
Comment: Comment: Why we use adjusted p-value not p-value in differential gene expression analysis
2.2 years ago by Amr ▴ 180
0
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2
replies
779
views
Is there a setting in GSEA software to filter counts less than 10 before go for GSEA analysis?
GSEA
updated 2.2 years ago by ▴ 100 • written 2.3 years ago by ▴ 180
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