User: gaurav.diwan
gaurav.diwan • 20
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- 20
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- Last seen:
- 2 months, 2 weeks ago
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- 3 months ago
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- g***********@bioquant.uni-heidelberg.de
Posts by gaurav.diwan
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... Hi Adrian,
This finally worked! Although if I may point out, I also had to copy the file `hog_bottom_up/gethogs/file_manager.py` to the folder `.venv/lib64/python3.6/site-packages/gethogs/` so that the program uses this modified file.
A couple of days ago, I had tried to add the `csv.field_size_li ...
written 11 weeks ago by
gaurav.diwan • 20
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... Hi Adrian,
Thanks a lot for your answer. I tried running the HOG computation step using the second command you suggested and it still shows me the same csv_reader related error (too many fields). I can share the Output folder with you. Would you like the entire folder or just a few files from it? A ...
written 11 weeks ago by
gaurav.diwan • 20
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... Hi Alex,
Thanks a lot for your answer! Well, the FASTA headers of my custom genome files come from Uniprot and contain a bunch of details. However, I used the following command to check how many columns each line of Output/Map-SeqNum-ID.txt file has:
awk --field-separator="\t" '{print NF}' Out ...
written 12 weeks ago by
gaurav.diwan • 20
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6 follow
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... I have been trying to run OMA standalone using a few genomes downloaded from the OMA browser and then adding a couple of my custom genomes. All the steps of OMA standalone including All-vs-All computations, pairwise orthologs etc have successfully finished. However, I have consistently faced the sam ...
written 12 weeks ago by
gaurav.diwan • 20
• updated
11 weeks ago by
adrian.altenhoff • 890
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