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Showing :
questions
3
votes
3
replies
752
views
Is the "ChIPseek" the online tool for ChIP data analysis not working?
ChIPseek
ChIP
20 months ago by
s.singh
▴ 70
1
vote
5
replies
1.3k
views
Can we get an Average Profile of ChIP peaks binding to Transcription "START and STOP site" both in a single plot?
ChIPseeker
updated 24 months ago by
Carlo Yague
8.7k • written 24 months ago by
s.singh
▴ 70
1
vote
6
replies
969
views
How to resolve the error which I get when I try to make objects for GRanges.
ChIPseeker
GRanges
updated 2.1 years ago by
Matthias Zepper
4.5k • written 2.1 years ago by
s.singh
▴ 70
0
votes
0
replies
553
views
How to compare the peaks called by MACS2 with the peaks called by ChIPOTLe?
ChIP
histone
MACS2
ChIPseq
ChIPOTLe
2.4 years ago by
s.singh
▴ 70
0
votes
0
replies
503
views
How to convert HTSeq raw read counts to FPKMs?
HTSeq
countToFPKM
counts
FPKM
read
2.5 years ago by
s.singh
▴ 70
2
votes
1
reply
686
views
Does HTSEQ output include non-coding genes also?
htseq
rnaseq
ngs
c.elegans
worms
updated 3.4 years ago by
WouterDeCoster
47k • written 3.4 years ago by
s.singh
▴ 70
1
vote
2
replies
1.0k
views
Where to find reference gene model for C. elegans to compute FPKM using RseQC?
RSeQC
RNAseq
next-gen
3.8 years ago by
s.singh
▴ 70
0
votes
2
replies
982
views
ChIP-seq technical replicates giving very different percentage mapping score. Is it normal?
ChIP
ChIPseq
bowtie
next-gen
sequencing
3.9 years ago by
s.singh
▴ 70
22
votes
4
replies
12k
views
How does samtools markdup works?
samtools
markdup
updated 18 months ago by
Ram
43k • written 4.3 years ago by
s.singh
▴ 70
1
vote
5
replies
1.5k
views
To fetch the reads which are being partially mapped to the genome
RNA-Seq
Bowtie2
HISAT2
STAR
jvarkit
updated 5.5 years ago by
GenoMax
141k • written 5.5 years ago by
s.singh
▴ 70
6
votes
6
replies
2.9k
views
Is it possible to visualize ChIP peaks of three different samples in one plot using ChIPseeker?
ChIP-Seq
ChIPseeker
bdg
updated 5.6 years ago by
ZZzzzzhong
▴ 240 • written 5.6 years ago by
s.singh
▴ 70
0
votes
0
replies
1.5k
views
Annotating chromatin interactions (interactions generated from HOMER)
Hi-C
HOMER
7.0 years ago by
s.singh
▴ 70
0
votes
0
replies
1.9k
views
Annotating significant interactions of Hi-C data of Barley (Hordeum vulgare)
homer
7.2 years ago by
s.singh
▴ 70
2
votes
1
reply
2.1k
views
ChIP peak data set comparison
chipseekar
ChIP-Seq
updated 7.7 years ago by
pariksheet.nanda
▴ 80 • written 7.7 years ago by
s.singh
▴ 70
5
votes
12
replies
5.9k
views
Peak annotation using ChIPseeker (bioconductor package)
ChIP-Seq
7.7 years ago by
s.singh
▴ 70
4
votes
3
replies
1.9k
views
ChIP data analysis high binding sites
ChIP-Seq
7.8 years ago by
s.singh
▴ 70
2
votes
1
reply
2.1k
views
cant find full annotated genomes of two strains of mouse (C57BL/6NJ and BALB/cJ)
sequence
updated 2.5 years ago by
Ram
43k • written 9.9 years ago by
s.singh
▴ 70
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