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3
votes
5
replies
1.4k
views
Problem in loading multiple BAM files in IGV
WGS IGV BAM
updated 16 months ago by 43k • written 16 months ago by ▴ 20
0
votes
0
replies
305
views
Variant calling from merged bam file with one vcf output
bam WGS variant calling
22 months ago by askif4 ▴ 20
1
vote
4
replies
1.3k
views
R ComplexHeatmap showing wrong output for for clustering columns
heatmap clustering R dendrogram
updated 2.3 years ago by 11k • written 2.3 years ago by ▴ 20
1
vote
3
replies
1.2k
views
How to compare alignments(SAM/BAM files) aligned to different references?
sam WGS NGS bam alignment
updated 2.7 years ago by ▴ 520 • written 2.7 years ago by ▴ 20
6
votes
2
replies
16k
views
GRCm39 (mm39) vs GRCm38(mm10)
genome reference mouse DNA dna
updated 3.1 years ago by 141k • written 3.1 years ago by ▴ 20
0
votes
0
replies
716
views
Is there any good chromosome recombination(crossover) analysis tools that are not old?
recombination Assembly gene sequencing
3.3 years ago by askif4 ▴ 20
0
votes
0
replies
1.0k
views
Questions using "WhatsHap" tool for haplotype phasing
SNP haplotype phasing sequencing
3.3 years ago by askif4 ▴ 20
4
votes
9
replies
2.3k
views
6 follow
How to check if a Fastq file is contaminated with other strains?
gene next-gen sequencing assembly
updated 2.7 years ago by ▴ 90 • written 3.3 years ago by ▴ 20
1
vote
3
replies
1.2k
views
How to calculate VAF from BAM or SAM(+pileups) files using pysam?
SNP sequencing bam VAF pysam
3.3 years ago by askif4 ▴ 20
0
votes
0
replies
833
views
How to determine specific strains(mouse) from BAM(or VCF) by unknown sample? (using or not using dbSNPs)
SNP VCF dbSNP mouse
3.4 years ago by askif4 ▴ 20
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