User: always_learning

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Posts by always_learning

<prev • 237 results • page 1 of 24 • next >
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Comment: C: Extract KEGG Enzyme data
... import sys f=open(sys.argv[1]) arr=[] for i in f: j = i.strip("\n").split('\t')[1] arr.append(j) print [arr[i:i + 3] for i in xrange(0, len(arr), 3)] This should work for you, assuming that you files is tab seperated file. ...
written 9 weeks ago by always_learning780
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Comment: C: Error in DADA2
... Can you try this please ? out <- filterAndTrim(fnFs, filtFs, fnRs, filtRs, truncLen=c(240,160), maxN=0, maxEE=c(2,2), truncQ=2, rm.phix=TRUE, compress=TRUE, multithread=FALSE)" ...
written 9 weeks ago by always_learning780
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Answer: A: Error in DADA2
... mc.cores > 1 is not available for windows. You may try as mc.cores = 1 something like below may work. mcmapply(fastqPairedFilter, mapply(c, fwd, rev, SIMPLIFY = FALSE), mc.cores = 1 ) Can you please try above and let us know. ...
written 9 weeks ago by always_learning780 • updated 9 weeks ago by genomax31k
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Answer: A: ROH ( Runs of Homozygosity Analysis)
... Hi I know about all these tools. I am moreover asking about how you will interpret results from these tools ? Is their any tutorials somewhere which can help me to understanding this ? Thanks ...
written 9 weeks ago by always_learning780
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ROH ( Runs of Homozygosity Analysis)
... Dear All, I want to know about ROH analysis ? How to perform it ? How to interpret out put ROH resut data from tools like plink and bcftols roh etc etc. Is their any tutorial or papers available to learn understand and learn these concepts ? Thanks Najeeb ...
wgs roh written 10 weeks ago by always_learning780
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Comment: C: GATK - gene panel VCF - too many variants - how to filter out
... You should use bed flle from SureSelect kit. java -jar GenomeAnalysisTK.jar -T HaplotypeCaller \ -R '/home/dee/bioinformatics/_reffiles/hg19/ucsc.hg19.fasta' \ -I '/1234/1234_remdup_recal.bam' \ -o '/1234/1234_remdup_recal.g.vcf' \ --emitRefConfidence GVCF \ --variant_index_ ...
written 11 weeks ago by always_learning780
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Comment: C: Tool Recommendations For Human Genome Assembly
... As far as I know GATK doesn't do Genome Assembly. ...
written 12 weeks ago by always_learning780
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Answer: A: Biomart error while convertint transcript ID.
... Thanks, Every one. I got the answer for this one actually my transcript was like values<- c("NM_000350.2","NM_000016.5","NM_004924.4","NM_001106.3","NM_000022.2") and it was not maching with any of records so i just converted this into values = c("NM_000350","NM_000016","NM_004924","NM_00110 ...
written 12 weeks ago by always_learning780
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Biomart error while convertint transcript ID.
... library("biomaRt") ensembl<- useMart("ensembl", dataset="hsapiens_gene_ensembl") value =read.csv("Refseq.txt", strip.white=TRUE) colnames(value) = c("name") values <- as.vector(value$name) getBM(attributes=c("refseq ...
biomart written 12 weeks ago by always_learning780
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Answer: A: Tool Recommendations For Human Genome Assembly
... Hello Friends, what's the latest update for Tool Recommendations For Human Genome Assembly? Any suggestion ? Thanks ...
written 3 months ago by always_learning780

Latest awards to always_learning

Popular Question 5 weeks ago, created a question with more than 1,000 views. For Gvcf Format From Illumina
Commentator 9 weeks ago, created a comment with at least 3 up-votes. For C: Need Help Understanding A Programming Statment Written In R
Scholar 12 weeks ago, created an answer that has been accepted. For A: Biomart error while convertint transcript ID.
Popular Question 4 months ago, created a question with more than 1,000 views. For Gvcf Format From Illumina
Great Question 4 months ago, created a question with more than 5,000 views. For Installing Bwa On 32 Bit Unix Machine
Good Question 4 months ago, asked a question that was upvoted at least 5 times. For Homozygous Indel/Snp & Heterozygous Indel/Snp
Popular Question 5 months ago, created a question with more than 1,000 views. For Gvcf Format From Illumina
Appreciated 5 months ago, created a post with more than 5 votes. For New Bioinformatics Courses At Cousera
Popular Question 6 months ago, created a question with more than 1,000 views. For Difference Between Target Re-Sequencing And Exome Sequencing !!
Popular Question 7 months ago, created a question with more than 1,000 views. For Using parallel with Mem
Popular Question 9 months ago, created a question with more than 1,000 views. For How To Convert Enzyme Id Of Kegg To Ncbi Protein Id'S
Student 9 months ago, asked a question with at least 3 up-votes. For Gwas Stepwise Tutorial
Great Question 10 months ago, created a question with more than 5,000 views. For Gwas Stepwise Tutorial
Popular Question 10 months ago, created a question with more than 1,000 views. For Gvcf Format From Illumina
Epic Question 10 months ago, created a question with more than 10,000 views. For Homozygous Indel/Snp & Heterozygous Indel/Snp
Popular Question 11 months ago, created a question with more than 1,000 views. For Gvcf Format From Illumina
Appreciated 11 months ago, created a post with more than 5 votes. For New Bioinformatics Courses At Cousera
Popular Question 13 months ago, created a question with more than 1,000 views. For problem while Installing BCFtools/htslib
Popular Question 14 months ago, created a question with more than 1,000 views. For problem while Installing BCFtools/htslib
Popular Question 14 months ago, created a question with more than 1,000 views. For problem while Installing BCFtools/htslib
Great Question 14 months ago, created a question with more than 5,000 views. For Homozygous Indel/Snp & Heterozygous Indel/Snp
Popular Question 15 months ago, created a question with more than 1,000 views. For problem while Installing BCFtools/htslib
Popular Question 15 months ago, created a question with more than 1,000 views. For problem while Installing BCFtools/htslib
Popular Question 17 months ago, created a question with more than 1,000 views. For problem while Installing BCFtools/htslib
Popular Question 17 months ago, created a question with more than 1,000 views. For problem while Installing BCFtools/htslib

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