User: always_learning
always_learning • 1.0k
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Posts by always_learning
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... yes Its manta. Primarily I am using MANTA for that. ...
written 5 weeks ago by
always_learning • 1.0k
0
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... Can you please help on this ? ...
written 6 weeks ago by
always_learning • 1.0k
0
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626
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... Can you please help on this ? ...
written 6 weeks ago by
always_learning • 1.0k
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6
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6
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Comment:
A: Sift Or Polyphen
... Where can we download the Pre-built Polyphen Score? http://genetics.bwh.harvard.edu/pph2/dokuwiki/downloads
Does it seem that I have to process these data to generate the final file?
Regards, Najeeb ...
written 4 months ago by
always_learning • 1.0k
0
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6
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24k
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6
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Comment:
A: Sift Or Polyphen
... Where can we download the Pre-built Polyphen Score?
http://genetics.bwh.harvard.edu/pph2/dokuwiki/downloads
Does it seem that I have to process these data to generate the final file?
Regards,
Najeeb ...
written 4 months ago by
always_learning • 1.0k
0
votes
1
answer
2.3k
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Comment:
C: Somatic indel calling with Pindel
... What if I have multiple pairs of data? Do I need to generate separate config file for each pair?
Regards,
Najeeb
...
written 4 months ago by
always_learning • 1.0k
0
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1
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267
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... Hi Dear,
Were you able to do that? I wanted to convert my MAF file in Matrix format for Oncoprint as well.
Thanks
Najeeb ...
written 5 months ago by
always_learning • 1.0k
0
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1
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833
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Comment:
C: TCGA TMB: What exome size to use?
... Did you get answer to your question? I have been trying to get this answer but so far didn't able to found that. ...
written 6 months ago by
always_learning • 1.0k
0
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2
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5.7k
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... Hi Florian,
How was your experience with the MACS2 bdgcmp option? I was trying to compare a Tumor and Normal sample ( both having CONTROL Sample) and after running MACS2 bdgcmp option, I am only getting 1-2 DMR peaks ? Is that anything obvious that I am missing?
Thanks ...
written 8 months ago by
always_learning • 1.0k
0
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2
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6.1k
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Comment:
C: Best tool for variant calling
... Hi Kevin,
Do you suggest the same pipeline across PANEL and exome data as well?
Thanks
Najeeb ...
written 12 months ago by
always_learning • 1.0k
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