User: always_learning
always_learning • 780
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Posts by always_learning
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Comment:
C: Extract KEGG Enzyme data
... import sys
f=open(sys.argv[1])
arr=[]
for i in f:
j = i.strip("\n").split('\t')[1]
arr.append(j)
print [arr[i:i + 3] for i in xrange(0, len(arr), 3)]
This should work for you, assuming that you files is tab seperated file. ...
written 9 weeks ago by
always_learning • 780
0
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169
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1
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Comment:
C: Error in DADA2
... Can you try this please ?
out <- filterAndTrim(fnFs, filtFs, fnRs, filtRs, truncLen=c(240,160),
maxN=0, maxEE=c(2,2), truncQ=2, rm.phix=TRUE,
compress=TRUE, multithread=FALSE)" ...
written 9 weeks ago by
always_learning • 780
0
votes
1
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Answer:
A: Error in DADA2
... mc.cores > 1 is not available for windows. You may try as mc.cores = 1
something like below may work.
mcmapply(fastqPairedFilter, mapply(c, fwd, rev, SIMPLIFY = FALSE), mc.cores = 1 )
Can you please try above and let us know. ...
written 9 weeks ago by
always_learning • 780
• updated
9 weeks ago by
genomax ♦ 31k
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2
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214
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... Hi I know about all these tools. I am moreover asking about how you will interpret results from these tools ? Is their any tutorials somewhere which can help me to understanding this ?
Thanks ...
written 9 weeks ago by
always_learning • 780
1
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2
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214
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2
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... Dear All,
I want to know about ROH analysis ? How to perform it ? How to interpret out put ROH resut data from tools like plink and bcftols roh etc etc. Is their any tutorial or papers available to learn understand and learn these concepts ?
Thanks
Najeeb ...
written 10 weeks ago by
always_learning • 780
3
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251
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3
answers
... You should use bed flle from SureSelect kit.
java -jar GenomeAnalysisTK.jar -T HaplotypeCaller \
-R '/home/dee/bioinformatics/_reffiles/hg19/ucsc.hg19.fasta' \
-I '/1234/1234_remdup_recal.bam' \
-o '/1234/1234_remdup_recal.g.vcf' \
--emitRefConfidence GVCF \
--variant_index_ ...
written 11 weeks ago by
always_learning • 780
0
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5
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3.5k
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5
answers
... As far as I know GATK doesn't do Genome Assembly.
...
written 12 weeks ago by
always_learning • 780
0
votes
1
answer
142
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1
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... Thanks, Every one. I got the answer for this one actually my transcript was like
values<- c("NM_000350.2","NM_000016.5","NM_004924.4","NM_001106.3","NM_000022.2") and
it was not maching with any of records so i just converted this into
values = c("NM_000350","NM_000016","NM_004924","NM_00110 ...
written 12 weeks ago by
always_learning • 780
0
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1
answer
142
views
1
answer
... library("biomaRt")
ensembl<- useMart("ensembl", dataset="hsapiens_gene_ensembl")
value =read.csv("Refseq.txt", strip.white=TRUE)
colnames(value) = c("name")
values <- as.vector(value$name)
getBM(attributes=c("refseq ...
written 12 weeks ago by
always_learning • 780
1
vote
5
answers
3.5k
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5
answers
... Hello Friends,
what's the latest update for Tool Recommendations For Human Genome Assembly?
Any suggestion ?
Thanks
...
written 3 months ago by
always_learning • 780
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For C: Need Help Understanding A Programming Statment Written In R
Scholar
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For A: Biomart error while convertint transcript ID.
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For Installing Bwa On 32 Bit Unix Machine
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14 months ago,
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For Homozygous Indel/Snp & Heterozygous Indel/Snp
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