User: always_learning

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Posts by always_learning

<prev • 244 results • page 1 of 25 • next >
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Comment: C: Extracting upstream and Downstream of a Gene based on different intervals
... Thanks !! How will I extract something like interval 50-5000 BPs region from a gene? ...
written 7 weeks ago by always_learning910
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Extracting upstream and Downstream of a Gene based on different intervals
... Hi All, I want to extract the regions for the few genes in upstream and downstream based on certain intervals for example in the range of 0-50, 50-5000, 5000-50000 basepair. What could be the best way to do that? One way I could think off is to make a bed files for these intervals separately and t ...
intervals upstream written 7 weeks ago by always_learning910 • updated 7 weeks ago by sacha1.3k
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Comment: C: Extract Sub-Set Of Regions From Vcf File
... For some reason by intersected out VCF have more line compare to input vcf. :( :( No idea what could be the possible reason for this !! Any guess ? ...
written 6 months ago by always_learning910
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Illumina genotyped the HapMap populations on the MetaboChip
... Hi All, In this paper https://www.ncbi.nlm.nih.gov/pubmed/25557782 , they mentioned that they have used "Additionally, Illumina genotyped the four original HapMap populations on the MetaboChip, and we used these genotypes to" Can someone help me in knowing that where I can download this data for H ...
hapmap population genetics written 8 months ago by always_learning910
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Answer: A: Gene Expression Downstream Analysis
... Thanks !! Is there any other tools or method or tutorials apart from this as well? Thanks Najeeb ...
written 9 months ago by always_learning910
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Gene Expression Downstream Analysis
... Hi, I did Survival Analysis on a Group of genes using TCGA( Thanks to Biostar) and found that some of them have very significant role based on P Values in some Cancers. Now I just wanted to relate these Genes with some other genes very relevant for some important pathways, although my studied genes ...
gene expression survival analysis written 9 months ago by always_learning910
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... rna_vm <- vm(rna) Show Traceback Rerun with Debug Error in voom(x, d, plot = F) : Need at least two genes to fit a mean-variance trend I am getting above error while running vm function. Can some one help me on this ? ...
written 11 months ago by always_learning910
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Comment: C: Extract KEGG Enzyme data
... import sys f=open(sys.argv[1]) arr=[] for i in f: j = i.strip("\n").split('\t')[1] arr.append(j) print [arr[i:i + 3] for i in xrange(0, len(arr), 3)] This should work for you, assuming that you files is tab seperated file. ...
written 13 months ago by always_learning910
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Comment: C: Error in DADA2
... Can you try this please ? out <- filterAndTrim(fnFs, filtFs, fnRs, filtRs, truncLen=c(240,160), maxN=0, maxEE=c(2,2), truncQ=2, rm.phix=TRUE, compress=TRUE, multithread=FALSE)" ...
written 13 months ago by always_learning910
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Answer: A: Error in DADA2
... mc.cores > 1 is not available for windows. You may try as mc.cores = 1 something like below may work. mcmapply(fastqPairedFilter, mapply(c, fwd, rev, SIMPLIFY = FALSE), mc.cores = 1 ) Can you please try above and let us know. ...
written 13 months ago by always_learning910 • updated 13 months ago by genomax51k

Latest awards to always_learning

Student 8 days ago, asked a question with at least 3 up-votes. For Gwas Stepwise Tutorial
Popular Question 5 weeks ago, created a question with more than 1,000 views. For Running Delly for structural Variants
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