User: always_learning

gravatar for always_learning
always_learning1000
Reputation:
1,000
Status:
Trusted
Location:
Doha, Qatar
Last seen:
2 days, 6 hours ago
Joined:
6 years, 3 months ago
Email:
s***************@gmail.com

about me

Posts by always_learning

<prev • 262 results • page 1 of 27 • next >
0
votes
1
answer
107
views
1
answers
Comment: C: How to convert maf file format to oncoPrint matrix (ComplexHeatmap package)?
... Hi Dear, Were you able to do that? I wanted to convert my MAF file in Matrix format for Oncoprint as well. Thanks Najeeb ...
written 11 days ago by always_learning1000
0
votes
1
answer
566
views
1
answers
Comment: C: TCGA TMB: What exome size to use?
... Did you get answer to your question? I have been trying to get this answer but so far didn't able to found that. ...
written 5 weeks ago by always_learning1000
0
votes
2
answers
5.4k
views
2
answers
Comment: C: MeDip-seq data interpretation + analysis / MEDIPS, MACS2
... Hi Florian, How was your experience with the MACS2 bdgcmp option? I was trying to compare a Tumor and Normal sample ( both having CONTROL Sample) and after running MACS2 bdgcmp option, I am only getting 1-2 DMR peaks ? Is that anything obvious that I am missing? Thanks ...
written 3 months ago by always_learning1000
0
votes
2
answers
4.7k
views
2
answers
Comment: C: Best tool for variant calling
... Hi Kevin, Do you suggest the same pipeline across PANEL and exome data as well? Thanks Najeeb ...
written 7 months ago by always_learning1000
0
votes
2
answers
4.7k
views
2
answers
Comment: C: Best tool for variant calling
... Regarding this point 4: Produce random BAM subsets per sample (usually 3 subsets at 25%, 50%, and 75% 'randomly' selected reads) Could you please explain the procedure or provide the command used? Thanks Najeeb ...
written 8 months ago by always_learning1000
0
votes
1
answer
409
views
1
answers
Comment: C: VCFParseError: ploidy > 2 not supported
... I think "genotype get set to unknown" will be a better approach. What do you think? ...
written 9 months ago by always_learning1000
0
votes
1
answer
409
views
1
answers
Comment: C: VCFParseError: ploidy > 2 not supported
... I can't run this again. This is merged VCF of around 6000 samples. I think It will fine to remove such sites from VCF. ...
written 9 months ago by always_learning1000
2
votes
1
answer
409
views
1
answer
VCFParseError: ploidy > 2 not supported
... I have few SNP with ploidy > 2 in my VCF(Human) generated by GATK with genotypes like "0/1/1". Any idea how I can remove them from my VCF file? Any tools that do that? ...
vcf gatk ploidy written 9 months ago by always_learning1000 • updated 7 months ago by tpoterba50
0
votes
0
answers
361
views
0
answers
Comment: C: AF comparison between two population.
... Thanks !! But I have just frequencies !! So I don't think that I can do similar to that. ...
written 13 months ago by always_learning1000
0
votes
0
answers
361
views
0
answers
Comment: C: AF comparison between two population.
... Please find dropbox link for example data. https://www.dropbox.com/s/1gjnoh1ft6k0aat/example.txt?dl=0 ...
written 13 months ago by always_learning1000

Latest awards to always_learning

Good Question 4 weeks ago, asked a question that was upvoted at least 5 times. For Annotation for SV and CNV
Good Question 4 weeks ago, asked a question that was upvoted at least 5 times. For Gwas Stepwise Tutorial
Popular Question 11 weeks ago, created a question with more than 1,000 views. For GERP score for all positions
Popular Question 3 months ago, created a question with more than 1,000 views. For GERP score for all positions
Popular Question 6 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 7 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Guru 7 months ago, received more than 100 upvotes.
Popular Question 9 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 11 months ago, created a question with more than 1,000 views. For GERP score for all positions
Popular Question 11 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 12 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Epic Question 12 months ago, created a question with more than 10,000 views. For Homozygous Indel/Snp & Heterozygous Indel/Snp
Popular Question 14 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 14 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 15 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Good Question 15 months ago, asked a question that was upvoted at least 5 times. For Homozygous Indel/Snp & Heterozygous Indel/Snp
Student 15 months ago, asked a question with at least 3 up-votes. For Gwas Stepwise Tutorial
Popular Question 16 months ago, created a question with more than 1,000 views. For Running Delly for structural Variants
Popular Question 17 months ago, created a question with more than 1,000 views. For Running Delly for structural Variants
Popular Question 18 months ago, created a question with more than 1,000 views. For Running Delly for structural Variants
Popular Question 18 months ago, created a question with more than 1,000 views. For Running Delly for structural Variants
Popular Question 19 months ago, created a question with more than 1,000 views. For Downloaing SRA using Aspera
Popular Question 19 months ago, created a question with more than 1,000 views. For Downloaing SRA using Aspera

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 3197 users visited in the last hour