User: always_learning

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always_learning1.1k
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Posts by always_learning

<prev • 276 results • page 1 of 28 • next >
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Comment: C: Method to classify given sample into subtype
... Are you looking for a PAM50 Signature? You may need to find genes used for PAM50 signature analysis? ...
written 19 days ago by always_learning1.1k
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Comment: C: RNA Seq and Somatic Calls for the Cancer data
... Thanks Kevin! I didn't understand point 3 properly. Do you have some reference paper for above so it will be easier for me to follow?. Thanks ...
written 10 weeks ago by always_learning1.1k
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Comment: C: RNA Seq and Somatic Calls for the Cancer data
... This particular cancer is a very rare type so we are trying to see if we can found some gene that may have some role in this using transcriptome data. We have performed somatic calling also and wondering if we can integrate data SNP data with RNA seq also. ...
written 10 weeks ago by always_learning1.1k
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RNA Seq and Somatic Calls for the Cancer data
... Dear All, I am working on a project related to cancer. I have RNASeq data only for tumor samples and matched Tumor/normal samples for WES data. I have performed WES calling on Tumor/Normal Sample. Now I wanted to analyze RNASeq data. Since I don't have matched Normal Control data for RNASeq so I ...
somatic tumor rna-seq written 10 weeks ago by always_learning1.1k • updated 10 weeks ago by Kevin Blighe66k
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Comment: C: GISTIC input parameters.
... Sorry for naive questions but what do you mean by reverse overlap? ...
written 11 weeks ago by always_learning1.1k
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Comment: C: low genomic inflation factor
... Anyone can shed some light on this? ...
written 3 months ago by always_learning1.1k
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Comment: C: genomic inflation factor calculation
... Which one the correct one? lambda <- median(chisq) / qchisq(0.5,1) or lambda <- median(chisq) / qchisq(0.456,1) ...
written 3 months ago by always_learning1.1k
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GENE BURDEN TEST
... Hi! What's the usual P-value cutoff for gene Based Association Burden test? I am running Linear Regression with Genes and associated phenotypes. I am using good quality nonsynonymous mutations for the Burden test. Regards, ...
exome gene burden written 3 months ago by always_learning1.1k
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Comment: C: How to annotate structural variants in VCF with esv/nsv identifiers
... yes Its manta. Primarily I am using MANTA for that. ...
written 8 months ago by always_learning1.1k
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Comment: C: How to annotate structural variants in VCF with esv/nsv identifiers
... Can you please help on this ? ...
written 8 months ago by always_learning1.1k

Latest awards to always_learning

Great Question 3 months ago, created a question with more than 5,000 views. For problem while Installing BCFtools/htslib
Great Question 4 months ago, created a question with more than 5,000 views. For problem while Installing BCFtools/htslib
Great Question 5 months ago, created a question with more than 5,000 views. For problem while Installing BCFtools/htslib
Great Question 7 months ago, created a question with more than 5,000 views. For problem while Installing BCFtools/htslib
Popular Question 9 months ago, created a question with more than 1,000 views. For getting GQ values with VCF using SAMTOOLS Mpileup
Scholar 11 months ago, created an answer that has been accepted. For A: Biomart error while convertint transcript ID.
Good Question 13 months ago, asked a question that was upvoted at least 5 times. For Gwas Stepwise Tutorial
Good Question 13 months ago, asked a question that was upvoted at least 5 times. For Annotation for SV and CNV
Popular Question 15 months ago, created a question with more than 1,000 views. For GERP score for all positions
Popular Question 15 months ago, created a question with more than 1,000 views. For GERP score for all positions
Popular Question 18 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 20 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Guru 20 months ago, received more than 100 upvotes.
Popular Question 22 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 23 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 23 months ago, created a question with more than 1,000 views. For GERP score for all positions
Popular Question 2.0 years ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Epic Question 2.0 years ago, created a question with more than 10,000 views. For Homozygous Indel/Snp & Heterozygous Indel/Snp
Popular Question 2.2 years ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 2.2 years ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 2.3 years ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Good Question 2.3 years ago, asked a question that was upvoted at least 5 times. For Homozygous Indel/Snp & Heterozygous Indel/Snp
Student 2.3 years ago, asked a question with at least 3 up-votes. For Gwas Stepwise Tutorial
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Running Delly for structural Variants
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Running Delly for structural Variants

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