User: always_learning

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always_learning1.0k
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Doha, Qatar
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Posts by always_learning

<prev • 268 results • page 1 of 27 • next >
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Comment: C: How to annotate structural variants in VCF with esv/nsv identifiers
... yes Its manta. Primarily I am using MANTA for that. ...
written 5 weeks ago by always_learning1.0k
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Comment: C: How to annotate structural variants in VCF with esv/nsv identifiers
... Can you please help on this ? ...
written 6 weeks ago by always_learning1.0k
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Answer: A: How to annotate structural variants in VCF with esv/nsv identifiers
... Can you please help on this ? ...
written 6 weeks ago by always_learning1.0k
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Comment: A: Sift Or Polyphen
... Where can we download the Pre-built Polyphen Score? http://genetics.bwh.harvard.edu/pph2/dokuwiki/downloads Does it seem that I have to process these data to generate the final file? Regards, Najeeb ...
written 4 months ago by always_learning1.0k
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Comment: A: Sift Or Polyphen
... Where can we download the Pre-built Polyphen Score? http://genetics.bwh.harvard.edu/pph2/dokuwiki/downloads Does it seem that I have to process these data to generate the final file? Regards, Najeeb ...
written 4 months ago by always_learning1.0k
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Comment: C: Somatic indel calling with Pindel
... What if I have multiple pairs of data? Do I need to generate separate config file for each pair? Regards, Najeeb ...
written 4 months ago by always_learning1.0k
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Comment: C: How to convert maf file format to oncoPrint matrix (ComplexHeatmap package)?
... Hi Dear, Were you able to do that? I wanted to convert my MAF file in Matrix format for Oncoprint as well. Thanks Najeeb ...
written 5 months ago by always_learning1.0k
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Comment: C: TCGA TMB: What exome size to use?
... Did you get answer to your question? I have been trying to get this answer but so far didn't able to found that. ...
written 6 months ago by always_learning1.0k
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Comment: C: MeDip-seq data interpretation + analysis / MEDIPS, MACS2
... Hi Florian, How was your experience with the MACS2 bdgcmp option? I was trying to compare a Tumor and Normal sample ( both having CONTROL Sample) and after running MACS2 bdgcmp option, I am only getting 1-2 DMR peaks ? Is that anything obvious that I am missing? Thanks ...
written 8 months ago by always_learning1.0k
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Comment: C: Best tool for variant calling
... Hi Kevin, Do you suggest the same pipeline across PANEL and exome data as well? Thanks Najeeb ...
written 12 months ago by always_learning1.0k

Latest awards to always_learning

Great Question 13 days ago, created a question with more than 5,000 views. For problem while Installing BCFtools/htslib
Popular Question 10 weeks ago, created a question with more than 1,000 views. For getting GQ values with VCF using SAMTOOLS Mpileup
Scholar 4 months ago, created an answer that has been accepted. For A: Biomart error while convertint transcript ID.
Good Question 6 months ago, asked a question that was upvoted at least 5 times. For Gwas Stepwise Tutorial
Good Question 6 months ago, asked a question that was upvoted at least 5 times. For Annotation for SV and CNV
Popular Question 8 months ago, created a question with more than 1,000 views. For GERP score for all positions
Popular Question 8 months ago, created a question with more than 1,000 views. For GERP score for all positions
Popular Question 11 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 13 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Guru 13 months ago, received more than 100 upvotes.
Popular Question 15 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 16 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 16 months ago, created a question with more than 1,000 views. For GERP score for all positions
Popular Question 17 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Epic Question 17 months ago, created a question with more than 10,000 views. For Homozygous Indel/Snp & Heterozygous Indel/Snp
Popular Question 19 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 20 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Popular Question 20 months ago, created a question with more than 1,000 views. For NGS Analysis Pipeline for Targeted Panel Data for SOMATIC tumours
Good Question 20 months ago, asked a question that was upvoted at least 5 times. For Homozygous Indel/Snp & Heterozygous Indel/Snp
Student 21 months ago, asked a question with at least 3 up-votes. For Gwas Stepwise Tutorial
Popular Question 22 months ago, created a question with more than 1,000 views. For Running Delly for structural Variants
Popular Question 22 months ago, created a question with more than 1,000 views. For Running Delly for structural Variants
Popular Question 23 months ago, created a question with more than 1,000 views. For Running Delly for structural Variants
Popular Question 23 months ago, created a question with more than 1,000 views. For Running Delly for structural Variants

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