User: always_learning
always_learning • 1.0k
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Posts by always_learning
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Comment:
C: low genomic inflation factor
... Anyone can shed some light on this? ...
written 19 days ago by
always_learning • 1.0k
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2.1k
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... Which one the correct one?
lambda <- median(chisq) / qchisq(0.5,1)
or
lambda <- median(chisq) / qchisq(0.456,1)
...
written 20 days ago by
always_learning • 1.0k
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... Hi!
What's the usual P-value cutoff for gene Based Association Burden test? I am running Linear Regression with Genes and associated phenotypes. I am using good quality nonsynonymous mutations for the Burden test.
Regards,
...
written 26 days ago by
always_learning • 1.0k
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812
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... yes Its manta. Primarily I am using MANTA for that. ...
written 5 months ago by
always_learning • 1.0k
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812
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... Can you please help on this ? ...
written 5 months ago by
always_learning • 1.0k
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812
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1
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... Can you please help on this ? ...
written 5 months ago by
always_learning • 1.0k
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6
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24k
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6
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Comment:
A: Sift Or Polyphen
... Where can we download the Pre-built Polyphen Score? http://genetics.bwh.harvard.edu/pph2/dokuwiki/downloads
Does it seem that I have to process these data to generate the final file?
Regards, Najeeb ...
written 8 months ago by
always_learning • 1.0k
0
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6
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24k
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6
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Comment:
A: Sift Or Polyphen
... Where can we download the Pre-built Polyphen Score?
http://genetics.bwh.harvard.edu/pph2/dokuwiki/downloads
Does it seem that I have to process these data to generate the final file?
Regards,
Najeeb ...
written 8 months ago by
always_learning • 1.0k
0
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1
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2.4k
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Comment:
C: Somatic indel calling with Pindel
... What if I have multiple pairs of data? Do I need to generate separate config file for each pair?
Regards,
Najeeb
...
written 8 months ago by
always_learning • 1.0k
0
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494
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... Hi Dear,
Were you able to do that? I wanted to convert my MAF file in Matrix format for Oncoprint as well.
Thanks
Najeeb ...
written 9 months ago by
always_learning • 1.0k
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