User: liupfskygre

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liupfskygre190
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Posts by liupfskygre

<prev • 36 results • page 1 of 4 • next >
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Comment: C: Multigene-Phylogeny: How to merge several Multiple-Sequence-Alignments?
... you may try concat from seqkit. ...
written 17 months ago by liupfskygre190
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Comment: C: Pathway Graphs for gene set from RNA-seq
... OK, thanks! ...
written 5.9 years ago by liupfskygre190
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Comment: C: Pathway Graphs for gene set from RNA-seq
... By the way, what tools did you use to do pathway enrichment analysis? Have you done GO enrichment? Thanks! ...
written 6.0 years ago by liupfskygre190
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8 follow
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Igv Coverage Track Display
... Hi, does anyone here know how to reverse the coverage track in IGV? I have separate the reads mapped to the + and -strand and want to display them one upwards and the other downwards, like the picture here: http://davetang.org/muse/2013/09/07/creating-a-coverage-plot-in-r/cage_density_plot_histo/ ...
coverage igv written 6.4 years ago by liupfskygre190 • updated 5.0 years ago by shen.yang.198110
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Forum: Mist2.2, Microbial Signal Transduction Database
... I was wondering where to find Signal Transduction system in my organisms, Finally I found this wonderful database. http://mistdb.com/ The Microbial Signal Transduction database contains the signal transduction proteins for bacterial and archaeal genomes (2,457 complete and 5,181 draft). These are ...
database forum written 6.4 years ago by liupfskygre190
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Comment: C: How To Download Bacterial Genomes And Cds By Genus From Embl
... months ago I began to learn to use Perl API to fetch bacteria gene information for my organism, I think they might have some solutions. following is a link for the API, http://www.ebi.ac.uk/training/online/outline_print/9021/all http://www.ebi.ac.uk/training/online/course/ensembl-filmed-api-worksho ...
written 6.4 years ago by liupfskygre190
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Comment: C: Protocol For Antisense Rna Analysis From Strand Specific Rna-Seq
... sorry to reply to you so later, I am working on the dissertation. Thanks for you answers. the HTseq output showed very low unambigous alignment (0 for archeal samples and 0.001%). there is about 10-20% of no feature, so I now i decide to use HTseq for counts summarization, and DEseq2 for test, and ...
written 6.4 years ago by liupfskygre190
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Comment: C: To What Degree Could We Determine Whether A Gene Is Expressed?
... thank you! this is what I am looking for! ...
written 6.4 years ago by liupfskygre190
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Comment: C: Goseq: Pwf: Error In If (Hi <= Low) { : Missing Value Where True/False Needed
... Thanks for your explanations! ...
written 6.4 years ago by liupfskygre190
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Comment: C: Goseq: Pwf: Error In If (Hi <= Low) { : Missing Value Where True/False Needed
... thanks, as for my case, missing data "NA" in the de.genes1 caused the problem! At first I tried to convert de.gene1 into numeric, but failed, recheck the data found NA existed. ...
written 6.4 years ago by liupfskygre190

Latest awards to liupfskygre

Great Question 17 months ago, created a question with more than 5,000 views. For Goseq: Pwf: Error In If (Hi <= Low) { : Missing Value Where True/False Needed
Great Question 2.9 years ago, created a question with more than 5,000 views. For Goseq: Pwf: Error In If (Hi <= Low) { : Missing Value Where True/False Needed
Epic Question 2.9 years ago, created a question with more than 10,000 views. For Goseq: Pwf: Error In If (Hi <= Low) { : Missing Value Where True/False Needed
Great Question 3.3 years ago, created a question with more than 5,000 views. For Goseq: Pwf: Error In If (Hi <= Low) { : Missing Value Where True/False Needed
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Bacterial Transcriptional Start Site Analysis By Using Rna-Seq Data.
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Goseq: Pwf: Error In If (Hi <= Low) { : Missing Value Where True/False Needed
Great Question 5.9 years ago, created a question with more than 5,000 views. For Goseq: Pwf: Error In If (Hi <= Low) { : Missing Value Where True/False Needed
Prophet 5.9 years ago, created a post with more than 20 followers. For To What Degree Could We Determine Whether A Gene Is Expressed?
Popular Question 5.9 years ago, created a question with more than 1,000 views. For Goseq: Pwf: Error In If (Hi <= Low) { : Missing Value Where True/False Needed
Popular Question 5.9 years ago, created a question with more than 1,000 views. For How To Get The Gene Names To Go Terms For Bacteria And Archaea
Popular Question 5.9 years ago, created a question with more than 1,000 views. For Igv Coverage Track Display
Popular Question 5.9 years ago, created a question with more than 1,000 views. For To What Degree Could We Determine Whether A Gene Is Expressed?
Popular Question 5.9 years ago, created a question with more than 1,000 views. For Protocol For Antisense Rna Analysis From Strand Specific Rna-Seq
Popular Question 5.9 years ago, created a question with more than 1,000 views. For Match And Merge Information By Id In Two Files
Popular Question 5.9 years ago, created a question with more than 1,000 views. For Use Perl To Edit Each Line Of A File
Popular Question 5.9 years ago, created a question with more than 1,000 views. For Bacterial Transcriptional Start Site Analysis By Using Rna-Seq Data.
Appreciated 6.4 years ago, created a post with more than 5 votes. For To What Degree Could We Determine Whether A Gene Is Expressed?
Good Question 6.4 years ago, asked a question that was upvoted at least 5 times. For To What Degree Could We Determine Whether A Gene Is Expressed?
Popular Question 6.4 years ago, created a question with more than 1,000 views. For Goseq: Pwf: Error In If (Hi <= Low) { : Missing Value Where True/False Needed
Student 6.4 years ago, asked a question with at least 3 up-votes. For To What Degree Could We Determine Whether A Gene Is Expressed?
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