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0
votes
2
replies
739
views
Two spatial transcriptomics datasets from same patient
Transcriptomics spatial
updated 10 months ago by 4.2k • written 2.1 years ago by ▴ 490
0
votes
4
replies
1.3k
views
Extracting genes form Components : NMF analysis
NMF components rcppml scRNA
2.3 years ago by David_emir ▴ 490
0
votes
0
replies
411
views
H & E images ANALYSIS protocol
analysis image HnE
2.7 years ago by David_emir ▴ 490
2
votes
5
replies
1.4k
views
Extracting only tumor samples from Single cell RNASeq
tumor cell singel RNA
updated 3.0 years ago by ★ 16k • written 3.0 years ago by ▴ 490
3
votes
7
replies
13k
views
Seurat Clustering - Cluster Numbers from 1 instead of 0
RNA-Seq seurat Cluster numbering
updated 3.2 years ago by • 0 • written 3.8 years ago by ▴ 490
2
votes
7
replies
1.6k
views
Gene expression file to Expression matrix
RNA-Seq
updated 3.5 years ago by ▴ 200 • written 3.5 years ago by ▴ 490
2
votes
5
replies
2.2k
views
rna seq public databases
RNA-Seq databases
3.5 years ago by David_emir ▴ 490
2
votes
3
replies
1.3k
views
Quantification of cell cluster in Single cell data
RNA-Seq single cell seurat Wilcoxon
3.5 years ago by David_emir ▴ 490
0
votes
0
replies
1.1k
views
Differentials Expressed Genes from each state in Monocle 2
single cell monocle2 DGE State
3.6 years ago by David_emir ▴ 490
1
vote
1
reply
1.1k
views
CMS subtype identification in Single cell data
single cell cmscaller RNA-Seq
updated 3.6 years ago by ★ 16k • written 3.6 years ago by ▴ 490
2
votes
7
replies
2.1k
views
Statistical test on Single-cell clusters(cell types)
statistical single cell exact permutation test
updated 2.1 years ago by 87k • written 3.7 years ago by ▴ 490
14
votes
11
replies
25k
views
Plotting heatmap of Marker genes in each celltypes in Seurat
seurat singlecell heatmap celltypes
updated 3.7 years ago by ★ 16k • written 3.7 years ago by ▴ 490
4
votes
3
replies
7.9k
views
Seurat :Violin plot showing relative expression of select differentially expressed genes
RNA-Seq seurat Violin plot
updated 3.7 years ago by ★ 5.2k • written 3.7 years ago by ▴ 490
1
vote
1
reply
4.3k
views
GSVA analysis between Clusters
GSVA Single cell seurat
updated 3.8 years ago by ▴ 230 • written 3.8 years ago by ▴ 490
5
votes
4
replies
18k
views
Exporting Raw counts into .csv file from seurat object
seurat raw counts csv
updated 2.2 years ago by • 0 • written 4.0 years ago by ▴ 490
3
votes
3
replies
21k
views
Subsetting - Raw Counts from Seurat Object
seurat raw counts RNA-Seq
4.0 years ago by David_emir ▴ 490
1
vote
3
replies
2.2k
views
Count Matrix from Single cell RNA
single cell RNA count matrix analysis
4.1 years ago by David_emir ▴ 490
4
votes
4
replies
4.0k
views
Can't open file 'features': [Errno 2] No such file or directory
2020plus 20/20Plus mafs random forest
updated 4.2 years ago by ▴ 1000 • written 4.2 years ago by ▴ 490
2
votes
2
replies
1.2k
views
Cancer driver mutations Identification from VCFs
cancer driver mutation vcf mcf
updated 4.2 years ago by ▴ 1000 • written 4.2 years ago by ▴ 490
3
votes
2
replies
5.2k
views
Changing Sample Names in Merged VCF file
VCF Sample
updated 4.2 years ago by 16k • written 4.2 years ago by ▴ 490
5
votes
5
replies
3.1k
views
Error RNA-seq data, TOPHAT
RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 490
5
votes
5
replies
1.3k
views
Single cell Expression Analysis
Single cell RNA seq
updated 4.2 years ago by ★ 16k • written 4.2 years ago by ▴ 490
6
votes
3
replies
3.3k
views
Validating Results from NMF Clustering & Consensus clustering
RNA-Seq validation
updated 4.8 years ago by ▴ 20 • written 4.8 years ago by ▴ 490
4
votes
7
replies
4.5k
views
6 follow
Aligning Multiple paired end files together
assembly alignment bwa shell
updated 2.6 years ago by ★ 4.3k • written 5.0 years ago by ▴ 490
2
votes
3
replies
1.2k
views
NIPT for microdeletion and microduplication sydnromes
nipt RAPIDr Microdeletion
5.0 years ago by David_emir ▴ 490
2
votes
3
replies
1.2k
views
ADVOCATE R package
RNA-Seq ADVOCATE R
updated 5.1 years ago by ★ 4.0k • written 5.1 years ago by ▴ 490
1
vote
3
replies
1.4k
views
Normal Samples From ICGC
ICGC Normal_samples
5.2 years ago by David_emir ▴ 490
1
vote
5
replies
1.7k
views
Downloding only RNA-Seq Raw counts data from ICGC
ICGC RAW counts
5.3 years ago by David_emir ▴ 490
0
votes
2
replies
818
views
Extracting data in a particular Format- only Raw counts in matrix format
RNA-Seq
updated 5.3 years ago by 104k • written 5.3 years ago by ▴ 490
1
vote
1
reply
2.3k
views
Downloading RNA-Seq Raw Count data form ICGC
ICGC Raw_data RNA-Seq
5.3 years ago by David_emir ▴ 490
5
votes
6
replies
1.3k
views
Does TCGA data represents whole population
TCGA
5.4 years ago by David_emir ▴ 490
3
votes
5
replies
1.3k
views
SNP array - Affy data analysis
snp array Affymetrix 2.0 platform
5.4 years ago by David_emir ▴ 490
1
vote
1
reply
2.8k
views
MAFTOOLS HELP - Mutational Signature
Mutational Signature maftools
updated 5.5 years ago by ▴ 140 • written 6.6 years ago by ▴ 490
1
vote
3
replies
2.5k
views
MCPcounter Heat map interpretation
mcpcounter heatmap
updated 5.7 years ago by 87k • written 5.7 years ago by ▴ 490
3
votes
6
replies
1.8k
views
Post Deseq2 Analysis
deseq2 machine learning
5.8 years ago by David_emir ▴ 490
2
votes
4
replies
3.1k
views
DESeq2 Error while applying standard analysis
deseq2 differential gene expression analysis
5.8 years ago by David_emir ▴ 490
1
vote
7
replies
3.2k
views
Arrow Assembly polishing Error "KeyError: 'BASECALLERVERSION'"
arrow Assembly pacbio BASECALLERVERSION
updated 5.8 years ago by • 0 • written 6.1 years ago by ▴ 490
10
votes
7
replies
4.1k
views
Quality control & Processing of RNA seq data
quality-control RNA-Seq
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 490
2
votes
3
replies
1.6k
views
Plotting genotype frequency distribution
af-dist plot distribution
updated 5.9 years ago by 87k • written 5.9 years ago by ▴ 490
2
votes
8
replies
3.3k
views
100% Missmatch when run with +fixref of BCFtools
bcftools fixref mismatch
5.9 years ago by David_emir ▴ 490
0
votes
0
replies
1.0k
views
QC on SNPs located in a haploid genome - GenomeStudio
genomestudio haploid gender
6.0 years ago by David_emir ▴ 490
7
votes
5
replies
2.1k
views
Differential gene expression Analysis - sample Size
RNA-Seq differential gene expression sample size
updated 6.0 years ago by 104k • written 6.0 years ago by ▴ 490
4
votes
3
replies
1.1k
views
Getting Index of normal/Diseased samples in R
index r RNA-Seq
updated 6.0 years ago by 11k • written 6.0 years ago by ▴ 490
0
votes
0
replies
2.4k
views
Falcon Assembly error - [ERROR]Task Node(1-preads_ovl) failed with exit-code=256
denovo falcon
6.0 years ago by David_emir ▴ 490
0
votes
4
replies
2.1k
views
Differential methylation analysis
differential-methylation
updated 11 months ago by 43k • written 6.1 years ago by ▴ 490
0
votes
5
replies
2.9k
views
Data Discrepency from TCGA-GDC portal and GDC firehose
TCGA GDC firehose
updated 6.1 years ago by ▴ 680 • written 6.1 years ago by ▴ 490
0
votes
1
reply
2.1k
views
Differentially methylated regions Analysis
tcgabiolinks DMR packages
updated 6.1 years ago by ▴ 330 • written 6.1 years ago by ▴ 490
3
votes
5
replies
3.9k
views
TCGABioLinks how to set Sample conditions?
TCGABolinks TCGA DMR DGE
updated 6.1 years ago by ▴ 90 • written 6.1 years ago by ▴ 490
0
votes
9
replies
2.0k
views
ELMER Package Error
ELEMER Package RNA-seq DGE DME
updated 6.1 years ago by • 0 • written 6.2 years ago by ▴ 490
0
votes
3
replies
2.8k
views
phasing with Eagle
Imputation without reference
6.3 years ago by David_emir ▴ 490
81 results • Page 1 of 2
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