User: sujitsilas
sujitsilas • 0
- Reputation:
- 0
- Status:
- New User
- Last seen:
- 9 hours ago
- Joined:
- 1 month, 3 weeks ago
- Email:
- s*********@gmail.com
Profile information, website and location are not shown for new users.
This helps us discourage the inappropriate use of our site.
Posts by sujitsilas
<prev
• 9 results •
page 1 of 1 •
next >
0
votes
1
answer
185
views
1
answers
Comment:
C: RNA-Seq Data analysis
... Thank you for your insight!
...
written 5 weeks ago by
sujitsilas • 0
0
votes
1
answer
185
views
1
answers
Comment:
C: RNA-Seq Data analysis
... Thank you! I'll look into that. I also have a .csv file format of the same experiment with FPKM data. Can the FPKM data be used in any way to find differentially expressed genes between the two datasets? ...
written 5 weeks ago by
sujitsilas • 0
0
votes
1
answer
185
views
1
answers
Comment:
C: RNA-Seq Data analysis
... But is there a way to look at the differences in gene expression between the two days? I also have a .csv file format of the same experiment with FPKM data. Can the FPKM data be used in any way? ...
written 5 weeks ago by
sujitsilas • 0
4
votes
1
answer
185
views
1
answer
... Hello everyone, I had tried comparing two gene expression datasets in the .tsv file formats (reads quantified using Salmon) that were obtained from the RefineBio website. I was able to annotate the data using Galaxy using a GTF file from ENSEMBL, but when I tried using edgeR or limma, an error would ...
written 5 weeks ago by
sujitsilas • 0
• updated
5 weeks ago by
dsull • 1.8k
0
votes
0
answers
261
views
0
answers
... I believe It’s going to be more like a meta-analysis. The p values and the fold change data would be more than enough to identify new candidates. However, I am not sure how each of the dataset can be normalized independently before comparison. I had tried using fold change functions but was unsure i ...
written 7 weeks ago by
sujitsilas • 0
0
votes
0
answers
261
views
0
answers
... Thank you for the insight, Kevin !! The ultimate goal is to compare these datasets to another experimental transcriptome dataset (given to me by my professor). The goal is to find new candidate genes that overlap with genes expressed in ectoderm or neuroectoderm development, and establish if there a ...
written 7 weeks ago by
sujitsilas • 0
0
votes
0
answers
261
views
0
answers
... ![This is how the data in the .csv file looks like: link:
https://ibb.co/Cw56j8c
...
written 7 weeks ago by
sujitsilas • 0
• updated
7 weeks ago by
Kevin Blighe ♦ 70k
0
votes
0
answers
261
views
0
answers
... GSE107552
GSE103715
GSE147270
...
written 7 weeks ago by
sujitsilas • 0
0
votes
0
answers
261
views
0
answers
... Hello, I had recently downloaded transcriptome data sets from GEO archive. I am trying to compare them to custom experimental datasets to find overlapping genes and differentially expressed genes. I previously tried using the supplementary files, the .soft files, the GEOquery package to access the ...
written 7 weeks ago by
sujitsilas • 0
Latest awards to sujitsilas
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1872 users visited in the last hour