User: archit22684

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Posts by archit22684

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Comment: C: How to remove X & Y chromosome genes from RNAseq data
... > head(rownames(countdata)) [1] "ENSG00000223972" "ENSG00000227232" "ENSG00000278267" "ENSG00000243485" "ENSG00000284332" [6] "ENSG00000237613" > head(X_Y$Geneid) [1] "ENSG00000228572" "ENSG00000182378" "ENSG00000178605" "ENSG00000226179" "ENSG00000167393" [6] "ENSG00 ...
written 13 days ago by archit226840
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Comment: C: How to remove X & Y chromosome genes from RNAseq data
... Hi Barry, sorry for delay in replying. I tried `!(rownames(countdata) %in% X_Y$Geneid)`. I am not getting any error but it is also not removing Geneid. ...
written 13 days ago by archit226840 • updated 13 days ago by _r_am32k
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Comment: C: How to remove X & Y chromosome genes from RNAseq data
... Hi Barry, I am getting a warning "Warning message: In rownames(countdata) != X_Y$Geneid : longer object length is not a multiple of shorter object length". ...
written 19 days ago by archit226840
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How to remove X & Y chromosome genes from RNAseq data
... Hello everyone, I am new in this field. I have used STAR and featurecounts followed by DEse2 for my RNAseq analysis. I want to remove X and Y chromosome genes from my bulk seq data. I don't know how to proceed with that. Do I need to remove the genes from the counts after featurecounts or using th ...
deseq2 featurecounts star rna-seq written 22 days ago by archit226840

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