User: Caitlin

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Caitlin90
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1 year, 11 months ago
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5 years, 7 months ago
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Posts by Caitlin

<prev • 19 results • page 1 of 2 • next >
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Extract list of gene names from Oncomine?
... HI all. I am using the "Research edition" of Oncomine and I am quite interested in extracting a list of gene names from a dataset without resorting to manually transcribing (no pun intended) each into a text file for subsequently performing a gene ontology. Thank you. ...
gene oncomine written 23 months ago by Caitlin90
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Triple Negative Breast Cancer: Undergraduate project help? Finding publicly accessible data.
... Hi all I am enrolled in an undergraduate computational biology course and I am struggling with the task of locating publicly accessible data for a course project. Ideally, from human patients / participants with control (unaffected) and experimental (affected) tissue sequences. I have been explorin ...
python cancer microarray R written 24 months ago by Caitlin90
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Training a classifier to recognize cancer biopsy images.
... Hi all. I am planning a semester project for my "Introduction to Computational Biology" course and I am very interested in both cancer and machine learning. I downloaded and installed: Python 3.5.3, keras, theano, tensorflow, matplotlib, mahotas, scikit-learn, and scikit-image. I was wondering if a ...
image cancer written 2.1 years ago by Caitlin90 • updated 2.1 years ago by Jean-Karim Heriche18k
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Help In Configuring A Local Blast Server.
... Hi all. I am attempting to configure a local BLAST server on a Windows XP machine. I found the following series of explanations helpful but incomplete: http://www.ncbi.nlm.nih.gov/books/NBK52637/ Relevant information: BLAST version: 2.2.29+ User Variable Setting: BLASTDB C:\Program Files\NCBI\b ...
bioinformatics windows blast written 5.1 years ago by Caitlin90 • updated 5.1 years ago by Drei50
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Retrieving Complete Genome Sequences For Deinococcus Hopiensis And Deinococcus Radiodurans
... Hi all. I'm working on a college project and I seem unable to find complete genome sequences for Deinococcus hopiensis and Deinococcus radiodurans (ideally retrievable in FASTA format). GenBank didn't seem to have either genome available when I searched the nucleotide database. Any help would be a ...
bioinformatics phylogenetics biology written 5.4 years ago by Caitlin90 • updated 5.4 years ago by Neilfws48k
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Understanding Amino Acid Patterns.
... HI all. I was wondering if someone could please explain the meaning of an amino acid pattern, e.g., P.{12,26}[AILV].NP[LN] If so, please do not post any code. All I need to do is understand the meaning of the above syntax. Thanks, ~Caitlin ...
bioinformatics written 5.4 years ago by Caitlin90 • updated 5.4 years ago by JacobS890
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Comment: C: Who Knows The Problem In This Perl Script
... By placing the use strict pragma at the beginning of your code (as the first line after the "shebang" which points to the perl executable). perl can perform some useful optimizations which can prove beneficial with regard to execution speed, memory management, etc. ~Caitlin ...
written 5.5 years ago by Caitlin90
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(Closed) Calculating Units Of Enzyme Activity
... Hi all. Note: This is not a homework question. I am studying for an exam. I'm preparing for an exam in my biotechnology class and I was wondering how to approach the following problem: A purified enzyme sample is assayed and it is determined that 80 mg of product was made in 1 mL of the starting ...
written 5.5 years ago by Caitlin90
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Comment: C: Beginning Bioinformatics Student In Need Of Advice And Clarification.
... Thanks Micheal! ;) ...
written 5.6 years ago by Caitlin90
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Comment: C: Beginning Bioinformatics Student In Need Of Advice And Clarification.
... Hi Emily. Thanks for the help. I have no doubt the info you provided will certainly prove beneficial. I have heard REST but I don't know anything about it (currently). Thankfully, my course project isn't due until early December of this year so I should have ample time to familiarize myself with th ...
written 5.6 years ago by Caitlin90

Latest awards to Caitlin

Popular Question 2.1 years ago, created a question with more than 1,000 views. For Understanding Amino Acid Patterns.
Appreciated 5.1 years ago, created a post with more than 5 votes. For Beginning Bioinformatics Student In Need Of Advice And Clarification.
Great Question 5.1 years ago, created a question with more than 5,000 views. For Creating A Phylogenetic Tree From A Multiple Sequence Alignment.
Good Question 5.1 years ago, asked a question that was upvoted at least 5 times. For Beginning Bioinformatics Student In Need Of Advice And Clarification.
Popular Question 5.1 years ago, created a question with more than 1,000 views. For Understanding Amino Acid Patterns.
Popular Question 5.1 years ago, created a question with more than 1,000 views. For Using Blast From Within Perl.
Popular Question 5.1 years ago, created a question with more than 1,000 views. For Beginning Bioinformatics Student In Need Of Advice And Clarification.
Popular Question 5.1 years ago, created a question with more than 1,000 views. For Creating A Phylogenetic Tree From A Multiple Sequence Alignment.
Popular Question 5.1 years ago, created a question with more than 1,000 views. For Help In Configuring A Local Blast Server.
Supporter 5.1 years ago, voted at least 25 times.
Student 5.1 years ago, asked a question with at least 3 up-votes. For Beginning Bioinformatics Student In Need Of Advice And Clarification.

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