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0
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3
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738
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Visualize coverage across exons with varying lengths
Exons python readdepth binning
updated 20 months ago by 8.9k • written 20 months ago by ▴ 110
0
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1
reply
516
views
How do I search for miRNA target seeds using command line mirtarbase?
mirTarBase miRNAseeds
updated 2.0 years ago by ★ 2.4k • written 2.0 years ago by ▴ 110
3
votes
1
reply
581
views
MrBayes default evolutionary model
mrbayes evolutionary model
updated 2.5 years ago by ★ 27k • written 2.5 years ago by ▴ 110
0
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0
replies
3.1k
views
Comment: Comment: How to number of SNPs in each sample in a multi vcf file
2.6 years ago by Kash ▴ 110
0
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1
reply
239k
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Comment: Comment: Tools To Calculate Average Coverage For A Bam File?
2.6 years ago by Kash ▴ 110
0
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1
reply
239k
views
Comment: Comment: Tools To Calculate Average Coverage For A Bam File?
2.6 years ago by Kash ▴ 110
4
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2
replies
3.1k
views
How to calculate the number of SNPs in each sample in a multi vcf file
vcf gatk multi SNP
2.6 years ago by Kash ▴ 110
0
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0
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2.3k
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Comment: Comment: Identifying Private SNPs between multi sample vcf files.
2.6 years ago by Kash ▴ 110
0
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0
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17k
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Comment: Comment: How Can I Count Snps In My Final Vcf Files
2.6 years ago by Kash ▴ 110
0
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1
reply
2.6k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
3.0 years ago by Kash ▴ 110
0
votes
1
reply
838
views
How to extract regions from abed file based on variants in vcf file
vcf bed vcftools
updated 2.9 years ago by 35k • written 3.0 years ago by ▴ 110
0
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1
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2.6k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
3.0 years ago by Kash ▴ 110
9
votes
11
replies
2.6k
views
How to filter a vcf file based on genotype of first two samples
vcf genotype filter
updated 2.9 years ago by 14k • written 3.0 years ago by ▴ 110
0
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1
reply
2.6k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
3.0 years ago by Kash ▴ 110
0
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1
reply
2.6k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
3.0 years ago by Kash ▴ 110
1
vote
1
reply
1.0k
views
Understanding blast2go annotation result
combinedGOgraph annotation blast2go
updated 3.1 years ago by 100k • written 3.1 years ago by ▴ 110
0
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0
replies
726
views
Difference between Go terms from blast hits and Interproscan in Blast2go
blast2go GO terms Interproscan Go graph
3.1 years ago by Kash ▴ 110
0
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0
replies
674
views
How to visualize sequence annotation results from Trinotate
Trinotate
3.1 years ago by Kash ▴ 110
0
votes
0
replies
564
views
What does prot_id and prot_coords represent in Trinotate output
Trinotate prot_id prot_coords
3.1 years ago by Kash ▴ 110
0
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1
reply
1.4k
views
Comment: C: How many nr file in NCBI nr database
3.2 years ago by Kash ▴ 110
2
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3
replies
1.4k
views
How many nr file in NCBI nr database
nr database
3.2 years ago by Kash ▴ 110
0
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0
replies
1.1k
views
Number of reads in the downloaded fastq file
SRA read count fasterq-dump vdb-dump --info
3.5 years ago by Kash ▴ 110
2
votes
3
replies
846
views
Does bedtools intersect output overlaps with isoforms?
bedtools isoforms
updated 3.6 years ago by 87k • written 3.6 years ago by ▴ 110
0
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0
replies
846
views
Comment: C: Does bedtools intersect output overlaps with isoforms?
3.6 years ago by Kash ▴ 110
0
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1
reply
4.1k
views
Comment: A: How to get input for provean from vcf files annotated by snpeff?
3.6 years ago by Kash ▴ 110
0
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1
reply
1.2k
views
expected heterozygosity, observed heterozygosity and excesshet key in vcf format
excesshet heterozygosity vcf
3.6 years ago by Kash ▴ 110
0
votes
1
reply
1.5k
views
Error while running gatk CombineGVCFs
gatk CombineGVCF USER ERROR
updated 3.7 years ago by 161k • written 3.7 years ago by ▴ 110
1
vote
1
reply
664
views
Assemble A1 and A2 reads using Trinity before running blastx on them
Assembly Trinity blastx
3.8 years ago by Kash ▴ 110
0
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0
replies
939
views
Comment: C: Extracting Allele Frequencies at a set of given positions
updated 4.4 years ago by 16k • written 4.4 years ago by ▴ 110
0
votes
2
replies
939
views
Extracting Allele Frequencies at a set of given positions
Allele Frequnecy VCF Whole genome DNA sequence
4.4 years ago by Kash ▴ 110
0
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0
replies
1.2k
views
Hard filtering vcf files
SNP genome variant calling hard filtering GATK
4.4 years ago by Kash ▴ 110
0
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1
reply
3.6k
views
Comment: C: What is ExcessHet key in the INFO field of a vcf file
4.6 years ago by Kash ▴ 110
1
vote
4
replies
3.6k
views
What is ExcessHet key in the INFO field of a vcf file
SNP next-gen sequencing
updated 4.6 years ago by ★ 1.7k • written 4.6 years ago by ▴ 110
1
vote
0
replies
969
views
Comment: C: How to define output for ALT tag in vcf file
4.6 years ago by Kash ▴ 110
0
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1
reply
969
views
Comment: C: How to define output for ALT tag in vcf file
4.6 years ago by Kash ▴ 110
4
votes
5
replies
969
views
How to define output for ALT tag in vcf file
SNP next-gen sequencing
updated 4.6 years ago by 141k • written 4.6 years ago by ▴ 110
0
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0
replies
1.4k
views
Comment: C: How to use a single file as the input to MaSuRCA
5.1 years ago by Kash ▴ 110
0
votes
1
reply
1.4k
views
Comment: C: How to use a single file as the input to MaSuRCA
5.1 years ago by Kash ▴ 110
1
vote
4
replies
1.4k
views
How to use a single file as the input to MaSuRCA
Assembly MaSuRCA input
updated 5.1 years ago by ★ 1.2k • written 5.1 years ago by ▴ 110
0
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0
replies
925
views
How to understand data in custom track of ucsc genome browsers
genome sequence UCSC genome browser custom track
5.1 years ago by Kash ▴ 110
0
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2
replies
4.3k
views
Relationship Between The Accuracy Of A Phylogenetic Tree And The Length Of The Sequences Used For Analysis
updated 5.6 years ago by 20 • written 10.3 years ago by ▴ 110
0
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0
replies
14k
views
Comment: C: Samtools give this error
7.8 years ago by Kash ▴ 110
0
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1
reply
14k
views
Comment: A: Samtools give this error
updated 7.8 years ago by 141k • written 7.8 years ago by ▴ 110
3
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7
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14k
views
Samtools give this error
Samtools
7.8 years ago by Kash ▴ 110
0
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0
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14k
views
Comment: C: Samtools give this error
7.8 years ago by Kash ▴ 110
0
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1
reply
14k
views
Comment: C: Samtools give this error
7.8 years ago by Kash ▴ 110
0
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0
replies
3.5k
views
Comment: C: Why 3' End Has A Lower Quality In Ngs Data
10.2 years ago by Kash ▴ 110
0
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1
reply
3.5k
views
Comment: C: Why 3' End Has A Lower Quality In Ngs Data
10.2 years ago by Kash ▴ 110
0
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4
replies
3.5k
views
Why 3' End Has A Lower Quality In Ngs Data
ngs
updated 10.2 years ago by 12k • written 10.2 years ago by ▴ 110
5
votes
1
reply
23k
views
Understanding Fastqc Output- Please Help
fastqc
updated 10.2 years ago by ★ 1.3k • written 10.2 years ago by ▴ 110
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