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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
2.2 years ago by bkleiboeker ▴ 370
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How to make contrasts to find genes DE in one experimental group but NOT in others?
edgeR limma matrix design R
updated 2.2 years ago by ★ 7.8k • written 2.2 years ago by ▴ 370
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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
2.2 years ago by bkleiboeker ▴ 370
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Comment: Comment: Strange results from limma output
2.2 years ago by bkleiboeker ▴ 370
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Comment: Comment: warning when installing "AnnotationDbi"
2.3 years ago by bkleiboeker ▴ 370
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Comment: Comment: qPCR assay Triplicate Ct SD
2.4 years ago by bkleiboeker ▴ 370
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Comment: Comment: Comparing multiple groups in edgeR
2.4 years ago by bkleiboeker ▴ 370
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Answer: Answer: Pan-cancer RNA-seq data normalization
2.4 years ago by bkleiboeker ▴ 370
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Comment: Comment: Design matrix for microarray experiment with covariates, cofactors, multiple fa
2.7 years ago by bkleiboeker ▴ 370
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3
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1.3k
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Design matrix for microarray experiment with covariates, cofactors, multiple factors, and one treatment?
mircoarray R matrix design limma
updated 2.7 years ago by 4.9k • written 2.7 years ago by ▴ 370
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Answer: Answer: What is the Sleuth intercept and how can Sleuth be used when you have >2 treatme
3.5 years ago by bkleiboeker ▴ 370
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Answer: Answer: RNA-seq gene list - HOMER Gene based analysis
3.8 years ago by bkleiboeker ▴ 370
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Comment: C: Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I ju
4.2 years ago by bkleiboeker ▴ 370
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Comment: C: Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I ju
4.2 years ago by bkleiboeker ▴ 370
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Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I just not understand the statistics?
RNA-Seq R edgeR
updated 4.2 years ago by 45k • written 4.2 years ago by ▴ 370
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Comment: C: Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I ju
4.2 years ago by bkleiboeker ▴ 370
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Answer: A: Matching gene ids in R
4.2 years ago by bkleiboeker ▴ 370
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Answer: A: How to add gene names to DGEList and convert to csv? gro-seq groHMM
4.2 years ago by bkleiboeker ▴ 370
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