User: RHI

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RHI0
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Posts by RHI

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Comment: A: ATAC-seq annotation to gene names
... Thank you so much. Is there a way I can do the same using R? Is there any package/function would you recommend me? Thanks! ...
written 6 weeks ago by RHI0
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ATAC-seq annotation to gene names
... Hello all, I’m doing ATAC seq differential peak analysis. I only have a file with the peaks counts from 2 groups with 3 replicates each, and the peak loci in a bed file. I run the differential analysis using the peak counts file in DESeq2 and have a list of DE peaks. I would like to know how to ann ...
atac-sec gene annotation de analysis written 6 weeks ago by RHI0
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Comment: A: ATAC-Seq Analysis - only peak counts and peak loci files available
... Hello all, I’m doing ATAC seq differential peak analysis. I only have a file with the peaks counts from 2 groups with 3 replicates each, and the peak loci in a bed file. I run the differential analysis using the peak counts file in DESeq2 and have a list of DE peaks. I would like to know how to anno ...
written 6 weeks ago by RHI0

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