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Answer: Answer: Easy differential expression heatmap?
2.9 years ago by ivivek_ngs ★ 5.2k
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1.4k
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Answer: A: targeted RNA-Seq best practices
4.2 years ago by ivivek_ngs ★ 5.2k
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8.5k
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Answer: A: Seurat :Violin plot showing relative expression of select differentially express
4.2 years ago by ivivek_ngs ★ 5.2k
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1.8k
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Answer: A: Calculate statistically significant enrichment score for a specific transcriptio
updated 4.6 years ago by 85k • written 8.4 years ago by ★ 5.2k
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Answer: A: How can I convert a tab delemeted file to vcf format using vcf-annotate tool?
updated 5.0 years ago by 44k • written 9.6 years ago by ★ 5.2k
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1.6k
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Answer: A: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.6 years ago by ivivek_ngs ★ 5.2k
2
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1.7k
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Answer: A: Data selection for RNA-seq data analysis
5.6 years ago by ivivek_ngs ★ 5.2k
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1.7k
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Answer: A: Tools for qRT-PCR data analysis
5.6 years ago by ivivek_ngs ★ 5.2k
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1
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2.7k
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Answer: A: What is the best way for applying Transfer learning on gene expression data ?
5.6 years ago by ivivek_ngs ★ 5.2k
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6.0k
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Answer: A: removeBatchEffect with or without log2 values
5.6 years ago by ivivek_ngs ★ 5.2k
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1
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2.3k
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Answer: A: Is there a database which gives meta-level information of mutation(both nuclueot
updated 6.1 years ago by 44k • written 8.7 years ago by ★ 5.2k
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11k
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Answer: A: Problem In running read.Table function in R
updated 6.1 years ago by 44k • written 8.6 years ago by ★ 5.2k
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0
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1.7k
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Answer: A: Probability of up/downregulation occuring by chance
updated 6.1 years ago by 44k • written 8.6 years ago by ★ 5.2k
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1
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15k
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Answer: A: Generating an ADMIXTURE plot that stacks the different values of K using R
updated 6.1 years ago by 44k • written 8.6 years ago by ★ 5.2k
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2.3k
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Answer: A: defining function of list of genes
updated 6.1 years ago by 44k • written 8.6 years ago by ★ 5.2k
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4.0k
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Answer: A: How to identify consecutive (adjacent) genomic intervals
updated 6.1 years ago by 44k • written 8.6 years ago by ★ 5.2k
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3.6k
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Answer: A: package R for vcf file ??
updated 6.1 years ago by 44k • written 8.6 years ago by ★ 5.2k
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0
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5.3k
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Answer: A: RNA seq results as fpkm
updated 6.1 years ago by 44k • written 8.6 years ago by ★ 5.2k
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0
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2.8k
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Answer: A: How do I identify and differentiate between unidirectional and bidirectional pro
updated 6.1 years ago by 44k • written 8.6 years ago by ★ 5.2k
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2
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Answer: A: ICGC Variant Calling Pipelines
updated 6.1 years ago by 44k • written 8.6 years ago by ★ 5.2k
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2.4k
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Answer: A: Drug set enrichment analysis
6.4 years ago by ivivek_ngs ★ 5.2k
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1.3k
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Answer: A: cancer immune subtypes based RNAseq data
6.5 years ago by ivivek_ngs ★ 5.2k
3
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1
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25k
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Answer: A: Difference between tSNE and PCA analysis
6.7 years ago by ivivek_ngs ★ 5.2k
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0
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1.4k
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Answer: A: Lnc RNA,RNA Seq
6.9 years ago by ivivek_ngs ★ 5.2k
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0
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1.5k
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Answer: A: Motif seq in input seq and genes
7.0 years ago by ivivek_ngs ★ 5.2k
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1
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1.3k
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Answer: A: RNA-sequencing dataset analyzed twice: good and poor estimate of false-positive
7.0 years ago by ivivek_ngs ★ 5.2k
1
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0
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2.3k
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Answer: A: How to identify the important SNPs from several GWAS studies
7.1 years ago by ivivek_ngs ★ 5.2k
2
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1
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3.1k
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Answer: A: Alternatives to TCGAbiolinks todownload the TCGA Data
7.1 years ago by ivivek_ngs ★ 5.2k
2
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0
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1.7k
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Answer: A: Bias in hypergeometric test
7.1 years ago by ivivek_ngs ★ 5.2k
6
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1
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9.9k
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Answer: A: How to find out the insert size in RNA seq data
7.1 years ago by ivivek_ngs ★ 5.2k
0
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1
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6.3k
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Answer: A: Extracting UMI sequences from paired-end reads
7.1 years ago by ivivek_ngs ★ 5.2k
2
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1
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10k
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Answer: Answer: n.sv number for batch effects in RNA-seq
7.1 years ago by ivivek_ngs ★ 5.2k
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1
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1.7k
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Answer: A: ICGC control sample
7.2 years ago by ivivek_ngs ★ 5.2k
1
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1
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4.3k
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Answer: A: Enrichment analysis: Which tool I should trust?
7.2 years ago by ivivek_ngs ★ 5.2k
3
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1
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7.9k
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Answer: C: CNV calling with Control-FREEC? Significant calls
7.2 years ago by ivivek_ngs ★ 5.2k
0
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1
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6.3k
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Answer: C: VEP and Annovar Annotation
updated 7.2 years ago by 24k • written 7.2 years ago by ★ 5.2k
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0
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3.1k
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Answer: A: Taking surrogate variable into account before running PCA
7.2 years ago by ivivek_ngs ★ 5.2k
1
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1
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3.3k
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Answer: A: Is it possible to run variant calling software in parallel, are there any Shell
7.2 years ago by ivivek_ngs ★ 5.2k
0
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0
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3.1k
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Answer: A: Bioinformatician salary - Current market
7.3 years ago by ivivek_ngs ★ 5.2k
1
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0
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1.5k
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Answer: A: How to find the neighbors of a sparce network using PPI network??
7.3 years ago by ivivek_ngs ★ 5.2k
2
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1
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1.4k
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Answer: A: The best pipeline for SNP calling in aquaculture breeding
7.4 years ago by ivivek_ngs ★ 5.2k
2
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0
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1.7k
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Answer: A: How to view the list of over or under expressed genes in any particular cancer?
7.4 years ago by ivivek_ngs ★ 5.2k
4
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1
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2.6k
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Answer: C: Differentially Expressed Genes Analysis with RNA-Seq data
7.4 years ago by ivivek_ngs ★ 5.2k
1
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0
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2.2k
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Answer: C: How to choose certain gene set to get known clusters?
7.5 years ago by ivivek_ngs ★ 5.2k
0
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0
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3.0k
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Answer: A: BAM file processing in chunks in R
7.5 years ago by ivivek_ngs ★ 5.2k
2
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0
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2.0k
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Answer: A: Is they any R package to download processed miRNA expression levle from TCGA?
7.5 years ago by ivivek_ngs ★ 5.2k
1
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0
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18k
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Answer: A: heatmap.2 reorder branches
7.5 years ago by ivivek_ngs ★ 5.2k
0
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1
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2.3k
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Answer: A: Read a text file into a list
7.5 years ago by ivivek_ngs ★ 5.2k
2
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1
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3.6k
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Answer: A: convert VCF into bayescan format
7.5 years ago by ivivek_ngs ★ 5.2k
0
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0
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2.1k
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Answer: A: bedtools shuffle with adjustment of GC ratio
7.5 years ago by ivivek_ngs ★ 5.2k
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