User: chiachoong_leong93

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Posts by chiachoong_leong93

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4
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Blastn, need help to increase speed
... Hi all, I am facing some difficulties in blasting my de novo assembled unigenes. I have about 85000 unigenes and was planning to blast it against the nt preformatted database from the ncbi ftp link. I used this command to download and check whether the db is up to date # update_blastdb.p ...
blastn blast+ rna-seq written 10 days ago by chiachoong_leong930 • updated 10 days ago by Mensur Dlakic9.1k
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How to combine my fq file based on sample
... Hello all, Currently I have 4 main samples, each with 3 biological replicates for a total of 12 samples. After running the sequencing, the raw data that I obtain in the fq file format was split, as an example Sample A Biological Rep 1_1 Sample A Biological Rep 1_2 Sample A Biological Rep 2_1 Samp ...
rna-seq written 7 weeks ago by chiachoong_leong930 • updated 7 weeks ago by MatthewP880

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