Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
2
votes
0
replies
2.4k
views
Answer: Answer: What type of Bioinformatics analysis could I perform if I have DNA sequences of
updated 2.4 years ago by 45k • written 9.9 years ago by ★ 2.2k
2
votes
3
replies
3.1k
views
Detection of fusion events of Retrotransposons and genes/lncRNA from RNA-seq data using available tools ?
Retrotransposons RNA-Seq Chimeric-Transcript
updated 2.4 years ago by 45k • written 9.9 years ago by ★ 2.2k
0
votes
0
replies
3.7k
views
Comment: C: p53 upregulated in cancer cell line
9.9 years ago by Manvendra Singh ★ 2.2k
1
vote
1
reply
5.1k
views
Comment: Comment: RNA-seq batch effect due to sequencing platform
updated 2.6 years ago by 45k • written 10.0 years ago by ★ 2.2k
1
vote
2
replies
2.0k
views
Answer: Answer: RNA-seq experiments, usually are made in parallel with the Ribosomal profiling e
updated 2.3 years ago by 45k • written 10.0 years ago by ★ 2.2k
0
votes
0
replies
2.8k
views
Comment: Comment: predicting protein binding regions within LncRNA
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.2k
1
vote
1
reply
6.2k
views
Comment: C: tRNA expression analysis from RNA-Seq
10.1 years ago by Manvendra Singh ★ 2.2k
0
votes
1
reply
2.8k
views
Answer: Answer: Tophat error on using NONCODE database gtf file.
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.2k
0
votes
0
replies
9.2k
views
Answer: A: Aligning Rna-Seq To Repetitive Line-1 Elements
10.1 years ago by Manvendra Singh ★ 2.2k
1
vote
0
replies
7.1k
views
Answer: Answer: RNA-Seq analysis across different species
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.2k
0
votes
0
replies
3.5k
views
Comment: Comment: Bam-files: How to know which reads are actual pairs?
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.2k
4
votes
1
reply
2.4k
views
Answer: Answer: regulatory regions discovery and alignment
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.2k
0
votes
1
reply
2.8k
views
Answer: A: predicting protein binding regions within LncRNA
10.1 years ago by Manvendra Singh ★ 2.2k
0
votes
1
reply
3.5k
views
Comment: C: Bam-files: How to know which reads are actual pairs?
10.1 years ago by Manvendra Singh ★ 2.2k
0
votes
0
replies
2.6k
views
Answer: A: Help with a reading count command using HTSeq
10.1 years ago by Manvendra Singh ★ 2.2k
1
vote
0
replies
2.5k
views
Comment: Comment: Microarray data analysis (median detection pvalue)
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.2k
1
vote
0
replies
1.7k
views
Answer: A: retreive sequence gene
10.1 years ago by Manvendra Singh ★ 2.2k
2
votes
0
replies
2.5k
views
Answer: Answer: Microarray data analysis (median detection pvalue)
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.2k
0
votes
0
replies
4.5k
views
Answer: Answer: Why cufflinks does not report raw read count anymore? Which version of it do rep
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.2k
0
votes
0
replies
3.7k
views
Answer: A: Read alignment for ChIPseq
updated 4.2 years ago by 45k • written 10.1 years ago by ★ 2.2k
3
votes
0
replies
11k
views
Answer: A: Chip-Seq - Peak caller for broad enrichment of histone modifications?
10.1 years ago by Manvendra Singh ★ 2.2k
1
vote
1
reply
4.4k
views
Answer: Answer: z score transformation from signal intensities of raw microarray data
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.2k
0
votes
1
reply
3.3k
views
Comment: Comment: merge PE reads for Transcript De-Novo Assembly ??
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.2k
1
vote
0
replies
1.9k
views
Answer: Answer: Case and control in microarray/RNA-seq analysis
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.2k
0
votes
0
replies
2.5k
views
Comment: Comment: corresponding gene names for probeIDs
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.2k
0
votes
1
reply
2.5k
views
Answer: A: corresponding gene names for probeIDs
10.2 years ago by Manvendra Singh ★ 2.2k
1
vote
0
replies
3.9k
views
Comment: Comment: Analyse Illumina Microarray data with lumi - read in data
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.2k
0
votes
1
reply
17k
views
Comment: C: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
10.3 years ago by Manvendra Singh ★ 2.2k
2
votes
1
reply
3.9k
views
Answer: Answer: Analyse Illumina Microarray data with lumi - read in data
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
1
vote
0
replies
2.4k
views
Comment: C: Tophat option -p
10.3 years ago by Manvendra Singh ★ 2.2k
3
votes
1
reply
2.4k
views
Answer: A: Tophat option -p
10.3 years ago by Manvendra Singh ★ 2.2k
0
votes
0
replies
29k
views
Comment: Comment: How do I convert Affymetrix ID names to gene names
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
1
reply
19k
views
Comment: Comment: Differential gene Analysis by Limma
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
0
replies
19k
views
Comment: Comment: Differential gene Analysis by Limma
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
0
replies
16k
views
Comment: Comment: HTSeq-count high number of no_feature
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
1
reply
16k
views
Comment: C: HTSeq-count high number of no_feature
10.3 years ago by Manvendra Singh ★ 2.2k
0
votes
0
replies
2.4k
views
Comment: Comment: biological replicates analysis
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
1
reply
2.4k
views
Comment: Comment: biological replicates analysis
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
1
reply
1.7k
views
Comment: Comment: differentially expressed gene
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
0
replies
3.0k
views
Answer: Answer: differential expression analysis of RNASeq data in different species
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
1
reply
2.7k
views
Comment: Comment: [solved] IGV browser: export feature coordinates to BED file does not work
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
0
replies
3.4k
views
Answer: Answer: Error in samtools uniquely mapped reads file
updated 3.7 years ago by 45k • written 10.3 years ago by ★ 2.2k
1
vote
1
reply
1.5k
views
Answer: C: Generatin expression level file from Bam file
10.3 years ago by Manvendra Singh ★ 2.2k
0
votes
0
replies
14k
views
Comment: C: why cannot I load my data with numeric variables in R?
10.3 years ago by Manvendra Singh ★ 2.2k
0
votes
1
reply
14k
views
Comment: C: why cannot I load my data with numeric variables in R?
10.3 years ago by Manvendra Singh ★ 2.2k
0
votes
1
reply
14k
views
Answer: Answer: Why am I unable to load my data from a tab separated file into R?
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
0
replies
11k
views
Comment: C: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
10.3 years ago by Manvendra Singh ★ 2.2k
0
votes
1
reply
11k
views
Answer: Answer: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
0
replies
2.6k
views
Comment: Comment: Which method could be used for cross normailizing microarray samples from differ
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
votes
1
reply
4.8k
views
Comment: C: Where can I download a list of mtDNA haplogroup mutations?
10.3 years ago by Manvendra Singh ★ 2.2k
374 results • Page 2 of 8
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6