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Answer: A: Ribo-seq Analysis software
updated 4.4 years ago by 43k • written 9.5 years ago by ★ 2.2k
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4.7k
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Answer: A: Calculating isoforms abundance using RNAseq data
updated 4.4 years ago by 43k • written 9.3 years ago by ★ 2.2k
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4.4k
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Answer: A: Publicly available Rna-Seq count data
updated 4.5 years ago by 43k • written 8.9 years ago by ★ 2.2k
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Answer: A: how to make cufflinks produce the nuclotide sequence of the gene + 5000 upstream
updated 4.5 years ago by 43k • written 9.1 years ago by ★ 2.2k
2
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Answer: Answer: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 24 months ago by 43k • written 9.2 years ago by ★ 2.2k
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Answer: A: How to check the bam file of read quality with graphically visual?
updated 4.5 years ago by 43k • written 9.5 years ago by ★ 2.2k
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4
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Answer: A: convert FASTA into FASTQ using linux
updated 5.4 years ago by 43k • written 9.5 years ago by ★ 2.2k
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Answer: A: retrieve genomic coordinate on mRNA
6.8 years ago by Manvendra Singh ★ 2.2k
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5.6k
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Answer: A: Intersecting vcf files with bedtools
7.2 years ago by Manvendra Singh ★ 2.2k
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2.3k
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Answer: A: Statistical significance in phylogenies
7.2 years ago by Manvendra Singh ★ 2.2k
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1
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6.0k
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Answer: A: STAR aligner fails to produce unmapped file
7.4 years ago by Manvendra Singh ★ 2.2k
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5.5k
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Answer: A: getfasta command requires a bedfile template of some sort
updated 7.5 years ago by 141k • written 7.5 years ago by ★ 2.2k
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Answer: A: Metabolic gene database: The most-frequently mutated metabolic genes in human ca
7.5 years ago by Manvendra Singh ★ 2.2k
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Answer: A: Non-coding RNA Atlas
7.5 years ago by Manvendra Singh ★ 2.2k
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3.3k
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Answer: A: Ensembl transcript ID - BioMart retrieval
7.5 years ago by Manvendra Singh ★ 2.2k
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1.6k
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Answer: A: Gene expression in populations
7.5 years ago by Manvendra Singh ★ 2.2k
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3.9k
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Answer: A: Differential isoform expression analyses
7.5 years ago by Manvendra Singh ★ 2.2k
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2.9k
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Answer: A: Identify the isoform of a transcript using RNA Seq data
7.6 years ago by Manvendra Singh ★ 2.2k
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3.6k
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Answer: A: Merging expression data from multiple platforms
7.7 years ago by Manvendra Singh ★ 2.2k
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2
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2.6k
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Answer: A: Time series microarray data
7.7 years ago by Manvendra Singh ★ 2.2k
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1.9k
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Answer: A: GFF model in Tophat and/or Cufflinks?
8.8 years ago by Manvendra Singh ★ 2.2k
2
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1
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8.7k
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Answer: A: removing outliers from RNA-seq data
8.8 years ago by Manvendra Singh ★ 2.2k
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1
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2.3k
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Answer: Answer: Batch Retrieval of Coding Sequences
updated 16 months ago by 43k • written 8.9 years ago by ★ 2.2k
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Answer: Answer: What type of Bioinformatics analysis could I perform if I have DNA sequences of
updated 16 months ago by 43k • written 8.9 years ago by ★ 2.2k
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2
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1.7k
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Answer: Answer: RNA-seq experiments, usually are made in parallel with the Ribosomal profiling e
updated 15 months ago by 43k • written 8.9 years ago by ★ 2.2k
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1
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2.5k
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Answer: Answer: Tophat error on using NONCODE database gtf file.
updated 21 months ago by 43k • written 9.0 years ago by ★ 2.2k
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8.3k
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Answer: A: Aligning Rna-Seq To Repetitive Line-1 Elements
9.0 years ago by Manvendra Singh ★ 2.2k
1
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0
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6.2k
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Answer: Answer: RNA-Seq analysis across different species
updated 22 months ago by 43k • written 9.0 years ago by ★ 2.2k
4
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1
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2.2k
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Answer: Answer: regulatory regions discovery and alignment
updated 22 months ago by 43k • written 9.0 years ago by ★ 2.2k
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1
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2.5k
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Answer: A: predicting protein binding regions within LncRNA
9.0 years ago by Manvendra Singh ★ 2.2k
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0
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2.4k
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Answer: A: Help with a reading count command using HTSeq
9.0 years ago by Manvendra Singh ★ 2.2k
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0
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1.5k
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Answer: A: retreive sequence gene
9.0 years ago by Manvendra Singh ★ 2.2k
2
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0
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2.3k
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Answer: Answer: Microarray data analysis (median detection pvalue)
updated 22 months ago by 43k • written 9.0 years ago by ★ 2.2k
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0
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4.1k
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Answer: Answer: Why cufflinks does not report raw read count anymore? Which version of it do rep
updated 22 months ago by 43k • written 9.0 years ago by ★ 2.2k
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0
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3.5k
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Answer: A: Read alignment for ChIPseq
updated 3.1 years ago by 43k • written 9.0 years ago by ★ 2.2k
3
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0
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9.3k
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Answer: A: Chip-Seq - Peak caller for broad enrichment of histone modifications?
9.0 years ago by Manvendra Singh ★ 2.2k
1
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1
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4.1k
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Answer: Answer: z score transformation from signal intensities of raw microarray data
updated 22 months ago by 43k • written 9.1 years ago by ★ 2.2k
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0
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1.8k
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Answer: Answer: Case and control in microarray/RNA-seq analysis
updated 23 months ago by 43k • written 9.1 years ago by ★ 2.2k
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1
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2.0k
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Answer: A: corresponding gene names for probeIDs
9.1 years ago by Manvendra Singh ★ 2.2k
2
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1
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3.5k
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Answer: Answer: Analyse Illumina Microarray data with lumi - read in data
updated 24 months ago by 43k • written 9.2 years ago by ★ 2.2k
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2.2k
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Answer: A: Tophat option -p
9.2 years ago by Manvendra Singh ★ 2.2k
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2.6k
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Answer: Answer: differential expression analysis of RNASeq data in different species
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.2k
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3.0k
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Answer: Answer: Error in samtools uniquely mapped reads file
updated 2.6 years ago by 43k • written 9.2 years ago by ★ 2.2k
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1
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1.3k
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Answer: C: Generatin expression level file from Bam file
9.2 years ago by Manvendra Singh ★ 2.2k
0
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1
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12k
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Answer: Answer: Why am I unable to load my data from a tab separated file into R?
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.2k
0
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1
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10k
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Answer: Answer: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.2k
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0
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1.8k
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Answer: Answer: Where can I download mitochondrial ancestral alleles?
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.2k
1
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1
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6.2k
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Answer: Answer: Z prime vs Z score
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.2k
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2
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2.3k
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Answer: Answer: Which method could be used for cross normailizing microarray samples from differ
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.2k
1
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0
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3.4k
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Answer: Answer: Using MEME-chip for motif discovery in sequences not derived from Chip-seq?
updated 2.1 years ago by 43k • written 9.2 years ago by ★ 2.2k
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