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Comment: C: Calculating isoforms abundance using RNAseq data
updated 3.4 years ago by 38k • written 8.2 years ago by ★ 2.2k
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1
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7.6k
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Comment: C: Cuffmerge running error
updated 3.4 years ago by 38k • written 8.4 years ago by ★ 2.2k
1
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1
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7.6k
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Comment: C: Cuffmerge running error
updated 3.4 years ago by 38k • written 8.4 years ago by ★ 2.2k
1
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1
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7.6k
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Comment: C: Cuffmerge running error
updated 3.4 years ago by 38k • written 8.4 years ago by ★ 2.2k
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2
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13k
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Comment: C: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 3.5 years ago by 38k • written 8.1 years ago by ★ 2.2k
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4.8k
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Comment: C: Convert A Psl File To A Sam File And Also Write Sequences To The Sam File?
updated 3.5 years ago by 38k • written 8.4 years ago by ★ 2.2k
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5.8k
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Comment: C: Trinity works on my PC
updated 3.5 years ago by 38k • written 8.5 years ago by ★ 2.2k
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1
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29k
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Comment: C: convert FASTA into FASTQ using linux
updated 4.3 years ago by 38k • written 8.4 years ago by ★ 2.2k
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2.7k
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Comment: C: Gene lists and calculated Ka/Ks ratio per gene
5.8 years ago by Manvendra Singh ★ 2.2k
1
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1.7k
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Comment: C: Any tools to detect lncRNAs from RNA-seq data?
6.1 years ago by Manvendra Singh ★ 2.2k
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1
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3.0k
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Comment: C: Overrepresented sequence in RNA-seq only in R2
6.5 years ago by Manvendra Singh ★ 2.2k
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0
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4.5k
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Comment: Comment: Comparing gene expression profiles between species
updated 12 months ago by 38k • written 6.6 years ago by ★ 2.2k
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1
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5.7k
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Comment: Comment: Endogenous Retrovirus Expression from RNA-Seq
updated 12 months ago by 38k • written 8.2 years ago by ★ 2.2k
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0
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11k
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Comment: C: GO analysis- analyze upregulated and downregulated genes separately?
7.6 years ago by Manvendra Singh ★ 2.2k
0
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1
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4.0k
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Comment: Comment: Why is DESeq a better method for finding highly upregulated and downregulated ge
updated 5 months ago by 38k • written 7.7 years ago by ★ 2.2k
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4.0k
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Comment: C: Why is DESeq a better method for finding highly upregulated and downregulated ge
7.7 years ago by Manvendra Singh ★ 2.2k
0
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0
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4.0k
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Comment: C: Why is DESeq a better method for finding highly upregulated and downregulated ge
7.7 years ago by Manvendra Singh ★ 2.2k
0
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1
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4.4k
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Comment: C: Differential expression analysis using Limma (Not on cel files)
7.8 years ago by Manvendra Singh ★ 2.2k
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0
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2.9k
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Comment: C: ChIP-Seq contaminated by human tissue?
7.8 years ago by Manvendra Singh ★ 2.2k
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2.0k
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Comment: C: Batch Retrieval of Coding Sequences
7.8 years ago by Manvendra Singh ★ 2.2k
0
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1
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6.1k
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Comment: C: Getting transcript annotation in BED format along with reference seq.
7.8 years ago by Manvendra Singh ★ 2.2k
0
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1
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6.1k
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Comment: Comment: Getting transcript annotation in BED format along with reference seq.
updated 3 months ago by 38k • written 7.8 years ago by ★ 2.2k
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0
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2.2k
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Comment: Comment: I need to know how to trimming RNAseq of GEO dataset.
updated 3 months ago by 38k • written 7.8 years ago by ★ 2.2k
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0
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2.2k
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Comment: Comment: What is the best way to get help on Bioconductor packages?
updated 3 months ago by 38k • written 7.8 years ago by ★ 2.2k
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1
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2.2k
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Comment: C: What is the best way to get help on Bioconductor packages?
7.8 years ago by Manvendra Singh ★ 2.2k
1
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0
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2.5k
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Comment: Comment: Differentially expressed microRNA analysis using bowtie2-cufflink-cuffdiff
updated 3 months ago by 38k • written 7.8 years ago by ★ 2.2k
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0
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3.1k
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Comment: C: p53 upregulated in cancer cell line
7.8 years ago by Manvendra Singh ★ 2.2k
1
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1
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4.3k
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Comment: Comment: RNA-seq batch effect due to sequencing platform
updated 6 months ago by 38k • written 7.8 years ago by ★ 2.2k
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0
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2.3k
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Comment: Comment: predicting protein binding regions within LncRNA
updated 8 months ago by 38k • written 7.9 years ago by ★ 2.2k
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1
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5.3k
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Comment: C: tRNA expression analysis from RNA-Seq
7.9 years ago by Manvendra Singh ★ 2.2k
0
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0
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3.0k
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Comment: Comment: Bam-files: How to know which reads are actual pairs?
updated 9 months ago by 38k • written 8.0 years ago by ★ 2.2k
0
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1
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3.0k
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Comment: C: Bam-files: How to know which reads are actual pairs?
8.0 years ago by Manvendra Singh ★ 2.2k
1
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0
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2.1k
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Comment: Comment: Microarray data analysis (median detection pvalue)
updated 9 months ago by 38k • written 8.0 years ago by ★ 2.2k
0
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1
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2.5k
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Comment: Comment: merge PE reads for Transcript De-Novo Assembly ??
updated 10 months ago by 38k • written 8.0 years ago by ★ 2.2k
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0
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1.6k
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Comment: Comment: corresponding gene names for probeIDs
updated 10 months ago by 38k • written 8.1 years ago by ★ 2.2k
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0
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3.2k
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Comment: Comment: Analyse Illumina Microarray data with lumi - read in data
updated 11 months ago by 38k • written 8.1 years ago by ★ 2.2k
0
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1
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13k
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Comment: C: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
8.1 years ago by Manvendra Singh ★ 2.2k
1
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0
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2.0k
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Comment: C: Tophat option -p
8.1 years ago by Manvendra Singh ★ 2.2k
0
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0
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25k
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Comment: Comment: How do I convert Affymetrix ID names to gene names
updated 11 months ago by 38k • written 8.1 years ago by ★ 2.2k
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1
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15k
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Comment: Comment: Differential gene Analysis by Limma
updated 11 months ago by 38k • written 8.1 years ago by ★ 2.2k
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0
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15k
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Comment: Comment: Differential gene Analysis by Limma
updated 11 months ago by 38k • written 8.1 years ago by ★ 2.2k
0
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0
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13k
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Comment: Comment: HTSeq-count high number of no_feature
updated 11 months ago by 38k • written 8.1 years ago by ★ 2.2k
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1
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13k
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Comment: C: HTSeq-count high number of no_feature
8.1 years ago by Manvendra Singh ★ 2.2k
0
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0
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1.9k
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Comment: Comment: biological replicates analysis
updated 11 months ago by 38k • written 8.1 years ago by ★ 2.2k
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1
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1.9k
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Comment: Comment: biological replicates analysis
updated 11 months ago by 38k • written 8.1 years ago by ★ 2.2k
0
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1
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1.4k
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Comment: Comment: differentially expressed gene
updated 11 months ago by 38k • written 8.1 years ago by ★ 2.2k
0
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1
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2.3k
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Comment: Comment: [solved] IGV browser: export feature coordinates to BED file does not work
updated 11 months ago by 38k • written 8.1 years ago by ★ 2.2k
0
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0
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11k
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Comment: C: why cannot I load my data with numeric variables in R?
8.1 years ago by Manvendra Singh ★ 2.2k
0
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1
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11k
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Comment: C: why cannot I load my data with numeric variables in R?
8.1 years ago by Manvendra Singh ★ 2.2k
0
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0
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9.1k
views
Comment: C: Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
8.2 years ago by Manvendra Singh ★ 2.2k
238 results • Page 1 of 5
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