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questions
3
votes
2
replies
804
views
Nextflow error: “Invalid method invocation call with arguments (java.util.ArrayList)” when connecting processes via joined channels
homer
chipseq
nextflow
updated 6 days ago by
ATpoint
90k • written 9 days ago by
DdogBoss
▴ 40
6
votes
3
replies
585
views
Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
fastqc
nextflow
multiqc
updated 4 weeks ago by
Phil Ewels
★ 1.5k • written 4 weeks ago by
DdogBoss
▴ 40
2
votes
2
replies
543
views
Nextflow: How to format input tuple for STAR_ALIGN process with STAR index directory
nextflow
4 weeks ago by
DdogBoss
▴ 40
0
votes
1
reply
1.0k
views
What is the proper output for a psiclass_vote.gtf file, and how does one add gene names and strand to gtf files?
psiclass
RNA-seq
10 months ago by
DdogBoss
▴ 40
2
votes
3
replies
1.0k
views
Is this featureCounts output normal, and how can I process it for DESeq2 analysis?
rna-seq
featurecounts
DESeq2
updated 11 months ago by
Gordon Smyth
★ 8.5k • written 11 months ago by
DdogBoss
▴ 40
0
votes
2
replies
1.2k
views
Segmentation fault error in CONTROL-FREEC
copy-number-variants
FREEC
2.2 years ago by
DdogBoss
▴ 40
2
votes
3
replies
1.2k
views
Samtools faidx can't be run in succession on two reference files?
Samtools
2.5 years ago by
DdogBoss
▴ 40
2
votes
4
replies
1.8k
views
How to install GATK for command line?
python
Snakemake
updated 2.6 years ago by
Istvan Albert
103k • written 2.6 years ago by
DdogBoss
▴ 40
0
votes
0
replies
583
views
Mcclintock pipeline stuck on "prepping reads"
transposable
elements
mcclintock
3.0 years ago by
DdogBoss
▴ 40
0
votes
0
replies
1.1k
views
Import error with rdkit
cheminformatics
python
rdkit
deepchem
updated 3.1 years ago by
iraun
6.2k • written 3.1 years ago by
DdogBoss
▴ 40
0
votes
0
replies
1.1k
views
Convert pdb file to table format or csv
Biopython
pdb
python
4.0 years ago by
DdogBoss
▴ 40
0
votes
1
reply
2.7k
views
Using BLAST API in Python
BLAST
Python
updated 4.8 years ago by
Ram
45k • written 4.8 years ago by
DdogBoss
▴ 40
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