User: nepalis

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nepalis10
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Posts by nepalis

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How To Find Human Homologs For Proteins From Candida Albicans
... I have a list of proteins from Candida albicans and i need to find humon hololog for ithe protein in the list. Is there a detabase or tool to do this ? thanks!! ...
homology protein human written 5.9 years ago by nepalis10 • updated 6 months ago by Biostar ♦♦ 20
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Using Bed File With Cuffdiff To Determine Expression Of Specific List Of Genes.
... Hi, I have a list of genes in bed format. I need to determine the expression levels of this genes in the experiment. I have aligned the file using tophat and i have cufflinks results too from older runs. Is there a way to determine the expression level for the genes in the bed format for tophat ali ...
rnaseq bed cuffdiff written 5.9 years ago by nepalis10 • updated 5.8 years ago by Devon Ryan91k
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How Are The Test_Stat, P-Value, Q-Value Calculated In The Cuffdiff Output
... I am looking at the output of cuffdiff. It has columns:test_id, gene_id, gene, locus, sample_1, sample_2, status, value_1, value_2, log2(fold_change), test_stat, p_value, q_value, significant. Can anybody explain how test_stat, p value, q value calculated ? what is the meaning of p value when i have ...
rnaseq cuffdiff written 5.9 years ago by nepalis10 • updated 5.9 years ago by David Westergaard1.4k

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