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5
votes
6
replies
3.1k
views
How many samples are there in 1000 genome project VCF file?
vcf 1000genome
updated 9.0 years ago by ★ 1.4k • written 9.0 years ago by ★ 2.1k
2
votes
3
replies
2.1k
views
NGS Sample contamination simulation
NGS
updated 9.0 years ago by 105k • written 9.0 years ago by ★ 2.1k
2
votes
1
reply
1.3k
views
How to determine the number of SNPs captured by a list of genes in VCF file
SNPs
9.0 years ago by MAPK ★ 2.1k
3
votes
3
replies
2.4k
views
Number of SNPs by target sequencing
SNP target panel sequencing
updated 9.0 years ago by ▴ 500 • written 9.0 years ago by ★ 2.1k
6
votes
6
replies
2.0k
views
Negative Identity by descent values
IBD
9.0 years ago by MAPK ★ 2.1k
0
votes
1
reply
1.6k
views
How to run this ContEst job in multi-thread cluster?
contest hpc-clustering
9.1 years ago by MAPK ★ 2.1k
0
votes
1
reply
2.0k
views
Methods to correct for population stratification
gwas
9.1 years ago by MAPK ★ 2.1k
6
votes
5
replies
2.8k
views
FLT3 genes in TCGA in AML
exome sequencing
updated 9.1 years ago by 22k • written 9.1 years ago by ★ 2.1k
2
votes
2
replies
1.4k
views
Cancer causing variants: Fit or unfit?
Genetic variants
updated 9.1 years ago by 22k • written 9.1 years ago by ★ 2.1k
1
vote
1
reply
1.3k
views
Homopolymer and repeat regions in burden test
burden test
9.1 years ago by MAPK ★ 2.1k
1
vote
3
replies
1.8k
views
Number of SNPs captured by targeted sequencing panels
targeted-sequencing
updated 2.2 years ago by 45k • written 9.1 years ago by ★ 2.1k
2
votes
1
reply
3.2k
views
How is QUAL score calculated in multigenome VCF file?
vcf
updated 9.1 years ago by ★ 1.7k • written 9.1 years ago by ★ 2.1k
1
vote
6
replies
3.6k
views
Merging VCF files with updated INFO tags
vcf
9.1 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.7k
views
Cryptic IBD in contaminated samples
IBD
9.1 years ago by MAPK ★ 2.1k
13
votes
14
replies
16k
views
How accurate is the IBD calculation by plink?
plink IBD
9.1 years ago by MAPK ★ 2.1k
6
votes
7
replies
6.0k
views
How to obtain the length of coding regions for the list of genes?
exome length coding region
updated 9.1 years ago by 7.1k • written 9.1 years ago by ★ 2.1k
0
votes
2
replies
1.9k
views
Genotype notations for complete genomics data
complete genomics
updated 9.2 years ago by 20 • written 9.3 years ago by ★ 2.1k
2
votes
1
reply
2.9k
views
vcftools subset data missing all the information in FORMAT column
vcftools
9.2 years ago by MAPK ★ 2.1k
13
votes
4
replies
19k
views
Command to extract SNPs from VCF file using bcftool
SNPs bcftools VCF
updated 2.2 years ago by 45k • written 9.2 years ago by ★ 2.1k
13
votes
10
replies
12k
views
Extract specific genes from VCF file?
extract VCF VCF snp
9.2 years ago by MAPK ★ 2.1k
0
votes
1
reply
2.1k
views
Extract Negative chromosome(gene) location from VCF files
VCF extract vcf chromosome location gene location
updated 9.2 years ago by 105k • written 9.2 years ago by ★ 2.1k
0
votes
1
reply
4.6k
views
Extracting subset of VCF file for list of genes
VCF
9.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.2k
views
Biospace target sequencing to multi-genome vcf file
target sequencing
9.2 years ago by MAPK ★ 2.1k
1
vote
4
replies
2.3k
views
Targeted capture sequencing data
targeted sequencing
9.2 years ago by MAPK ★ 2.1k
0
votes
1
reply
1.6k
views
Where can I find targeted sequencing data
targeted sequencing
9.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.7k
views
Batch effect in whole genome data
complete genomics
9.2 years ago by MAPK ★ 2.1k
3
votes
3
replies
3.7k
views
How to estimate the power of association test for small sample size
association test
updated 9.2 years ago by 5.3k • written 9.2 years ago by ★ 2.1k
2
votes
4
replies
2.3k
views
Family-based assciation study Vs. Population-based case-control study
GWAS
updated 9.2 years ago by • 0 • written 9.4 years ago by ★ 2.1k
7
votes
4
replies
2.6k
views
Non-coding variants in TCGA data
cancer SNPs
updated 9.2 years ago by 22k • written 9.2 years ago by ★ 2.1k
31
votes
10
replies
46k
views
6 follow
Extract subset of samples from multigenome vcf file
vcf
9.2 years ago by MAPK ★ 2.1k
3
votes
5
replies
2.0k
views
Why are there too many mutations in controls, but not in tumour?
cancer somatics mutation
updated 9.2 years ago by ▴ 940 • written 9.2 years ago by ★ 2.1k
3
votes
1
reply
2.7k
views
How to separate germline variants from somatic and vice-versa in cancer
somatic germline cancer
updated 9.2 years ago by 7.3k • written 9.2 years ago by ★ 2.1k
4
votes
3
replies
2.2k
views
Complex disease vs. Cancer
complex disease variants
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ★ 2.1k
0
votes
5
replies
1.6k
views
QC methods for next generation sequencing samples
NGS samples
updated 9.2 years ago by 48k • written 9.2 years ago by ★ 2.1k
0
votes
1
reply
1.8k
views
What are the factors that determines the IBD of pairs of individuals?
IBD
9.2 years ago by MAPK ★ 2.1k
3
votes
1
reply
2.1k
views
Using cbioportal gene ontology for new gene/variants discovery
gene discovery cancer
9.3 years ago by MAPK ★ 2.1k
0
votes
2
replies
2.0k
views
How to validate genes identified computationally
functional validation
9.3 years ago by MAPK ★ 2.1k
4
votes
2
replies
2.1k
views
Confusing HGVS notation
HGVS
9.3 years ago by MAPK ★ 2.1k
4
votes
1
reply
1.5k
views
Publication for cancer causing somatic variants
publication
9.3 years ago by MAPK ★ 2.1k
3
votes
2
replies
2.1k
views
COSMIC data and rare variant
rare variant
updated 9.3 years ago by ▴ 1000 • written 9.3 years ago by ★ 2.1k
5
votes
5
replies
4.0k
views
How to find exact allele frequency for the SNP/indel variants ?
maf dbsnp
9.3 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.9k
views
How to identify each data point in PCA for ethnicity study?
PCA GWAS
9.3 years ago by MAPK ★ 2.1k
3
votes
3
replies
1.9k
views
Simulate genotypes for Identity by descent test
IBD
updated 9.3 years ago by 28k • written 9.3 years ago by ★ 2.1k
3
votes
1
reply
4.7k
views
How do you calculate IBD
IBD
updated 9.3 years ago by ▴ 920 • written 9.3 years ago by ★ 2.1k
19
votes
4
replies
3.1k
views
How to do coverage counting for each genomic position in R ?
R
updated 2.5 years ago by 45k • written 10.0 years ago by ★ 2.1k
0
votes
0
replies
1.4k
views
High confidence junction events in complete genomics data
whole genome
9.3 years ago by MAPK ★ 2.1k
0
votes
1
reply
4.1k
views
Trueseq Vs Nextera
exome sequencing
updated 2.9 years ago by 45k • written 9.4 years ago by ★ 2.1k
5
votes
5
replies
2.7k
views
Why is it important to control ethnicity when studying rare variants?
association study driver mutation
updated 9.4 years ago by 7.3k • written 9.4 years ago by ★ 2.1k
3
votes
2
replies
1.4k
views
How to get specific genes in bed format where each exon is covered base by base?
bed exome
updated 2.9 years ago by 45k • written 9.4 years ago by ★ 2.1k
3
votes
3
replies
2.6k
views
How to get the coverage of whole gene in exome sequencing data
coverage exome
updated 2.9 years ago by 45k • written 9.4 years ago by ★ 2.1k
238 results • Page 4 of 5
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