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Showing :
questions
3
votes
5
replies
2.8k
views
How to find the variant type, location and effects (synonymous/nonsynonymous)
variant-type
SNPs
updated 3.0 years ago by
Ram
45k • written 9.5 years ago by
MAPK
★ 2.1k
5
votes
3
replies
6.3k
views
IBD vs IBS
GWAS
updated 3.0 years ago by
Ram
45k • written 9.5 years ago by
MAPK
★ 2.1k
0
votes
4
replies
2.9k
views
Statistical analysis to compare three different variables
statistical-modelling
updated 3.0 years ago by
Ram
45k • written 9.5 years ago by
MAPK
★ 2.1k
10
votes
12
replies
3.7k
views
What could be the reason for having mutations in too many cancer samples?
somatic-mutation
Driver-mutation
updated 3.0 years ago by
Ram
45k • written 9.5 years ago by
MAPK
★ 2.1k
0
votes
0
replies
1.6k
views
Complete genomics genotype quality score for variant calls
complete-genomics
updated 3.1 years ago by
Ram
45k • written 9.7 years ago by
MAPK
★ 2.1k
2
votes
1
reply
2.0k
views
How to interpret vcf file (output of mkvcf) for complete genomics data
sequencing
complete-genomics
updated 3.0 years ago by
Ram
45k • written 9.5 years ago by
MAPK
★ 2.1k
2
votes
3
replies
11k
views
What are the terms for reference allele and alternate alleles in cancer?
cancer Sequencing
updated 9.6 years ago by
Chris Miller
22k • written 9.6 years ago by
MAPK
★ 2.1k
1
vote
3
replies
2.2k
views
Complete Genomics data analysis, pipeline version and batch effect
sequencing
batch-effect
complete-genomics
updated 2.9 years ago by
Ram
45k • written 9.7 years ago by
MAPK
★ 2.1k
14
votes
4
replies
6.6k
views
Bash Loop For Job Submission
bash
perl
9.7 years ago by
MAPK
★ 2.1k
2
votes
3
replies
2.5k
views
Reverse translate and get the genomic position
sequencing
genome
sequence
updated 2.9 years ago by
Ram
45k • written 9.7 years ago by
MAPK
★ 2.1k
1
vote
0
replies
1.3k
views
Genotype of cancer genomes
sequencing
genome
updated 2.8 years ago by
Ram
45k • written 9.9 years ago by
MAPK
★ 2.1k
6
votes
3
replies
4.9k
views
R programming: string split n number of characters and cbind them in n number of new columns
R
updated 2.7 years ago by
Ram
45k • written 10.1 years ago by
MAPK
★ 2.1k
0
votes
0
replies
1.5k
views
Pileup from Rsamtool missing snps in bam files
R
updated 2.6 years ago by
Ram
45k • written 10.0 years ago by
MAPK
★ 2.1k
2
votes
2
replies
1.7k
views
R programming: search by making key terms
R
updated 3.1 years ago by
Ram
45k • written 10.1 years ago by
MAPK
★ 2.1k
0
votes
1
reply
1.7k
views
What are the Differences between Complete genomics, Whole Exome Sequencing and Sequenom MassArray?
sequencing
genome
updated 2.6 years ago by
Ram
45k • written 10.1 years ago by
MAPK
★ 2.1k
5
votes
7
replies
3.8k
views
Concordance analysis using statistics/graphs/figures
analysis
updated 2.5 years ago by
Ram
45k • written 10.1 years ago by
MAPK
★ 2.1k
14
votes
6
replies
15k
views
R programming, concatenate or combine all the column contents
R
updated 3.1 years ago by
Ram
45k • written 10.1 years ago by
MAPK
★ 2.1k
13
votes
4
replies
2.8k
views
R programming, column reordering
R
updated 2.5 years ago by
Ram
45k • written 10.2 years ago by
MAPK
★ 2.1k
11
votes
8
replies
4.8k
views
R programming: genotype concordance
R
updated 2.4 years ago by
Ram
45k • written 10.2 years ago by
MAPK
★ 2.1k
9
votes
7
replies
44k
views
R programming: compare columns to column and get the mismatch
R
updated 2.4 years ago by
Ram
45k • written 10.2 years ago by
MAPK
★ 2.1k
7
votes
4
replies
2.0k
views
R programming: Merge tables
R
updated 2.4 years ago by
Ram
45k • written 10.2 years ago by
MAPK
★ 2.1k
8
votes
4
replies
5.7k
views
How to match and reorder these vectors in R
R
updated 2.4 years ago by
Ram
45k • written 10.2 years ago by
MAPK
★ 2.1k
3
votes
10
replies
2.7k
views
R programming question: genotyping data table manipulation2
R
updated 3.0 years ago by
Ram
45k • written 10.2 years ago by
MAPK
★ 2.1k
6
votes
4
replies
2.4k
views
R programming question: genotyping data table manipulation
R
updated 3.0 years ago by
Ram
45k • written 10.2 years ago by
MAPK
★ 2.1k
7
votes
6
replies
3.1k
views
R programming question: insert alternately
R
updated 3.0 years ago by
Ram
45k • written 10.2 years ago by
MAPK
★ 2.1k
8
votes
4
replies
6.5k
views
Command to get BlastDB(Blast Database) information
BLAST
updated 3.1 years ago by
Ram
45k • written 11.1 years ago by
MAPK
★ 2.1k
6
votes
1
reply
2.4k
views
Explanation on genotypes notations
genotypes
updated 3.1 years ago by
Ram
45k • written 10.3 years ago by
MAPK
★ 2.1k
6
votes
1
reply
6.4k
views
R programming: match ID in a column and extract all the matching rows
dataframe
R
updated 3.1 years ago by
Ram
45k • written 10.3 years ago by
MAPK
★ 2.1k
5
votes
8
replies
17k
views
R programming question: extract all the rows matching Ids
cbind
dataframe
match
updated 3.1 years ago by
Ram
45k • written 10.3 years ago by
MAPK
★ 2.1k
9
votes
5
replies
13k
views
compare two data frames column to column
R
csv
updated 3.2 years ago by
Ram
45k • written 10.4 years ago by
MAPK
★ 2.1k
0
votes
1
reply
2.0k
views
Map genomic location to human genome
mapping
gene-loci
updated 3.3 years ago by
Ram
45k • written 10.5 years ago by
MAPK
★ 2.1k
2
votes
3
replies
2.7k
views
How to obtain Coding sequence from Genomic sequence?
coding
genome
updated 3.5 years ago by
Ram
45k • written 11.0 years ago by
MAPK
★ 2.1k
14
votes
11
replies
16k
views
6 follow
What is GFF3 and how to extract genomic sequences from it?
sequence
gene
Gff3
genomic
updated 3.8 years ago by
Ram
45k • written 11.2 years ago by
MAPK
★ 2.1k
1
vote
1
reply
2.8k
views
Gene prediction tool
Gene-prediction
updated 3.6 years ago by
Ram
45k • written 10.9 years ago by
MAPK
★ 2.1k
13
votes
13
replies
17k
views
9 follow
How to extract the longest orf?
getorf
ORF
updated 3.7 years ago by
Ram
45k • written 11.0 years ago by
MAPK
★ 2.1k
0
votes
1
reply
3.0k
views
Reciprocal blast and protein identification
Reciprocal-BLAST
BLAST
updated 3.7 years ago by
Ram
45k • written 11.1 years ago by
MAPK
★ 2.1k
0
votes
2
replies
2.6k
views
Full length transcriptome from SRA data
SRA
transcriptome
updated 11.1 years ago by
Devon Ryan
105k • written 11.1 years ago by
MAPK
★ 2.1k
2
votes
7
replies
5.7k
views
How To Do Multi-Sequence Alignment Of Scaffolds ?
bowtie2
transcript
alignment
updated 11.5 years ago by
Adrian Pelin
★ 2.7k • written 11.5 years ago by
MAPK
★ 2.1k
238 results • Page
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