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mageckflute scatterview not labeling centric genes
crispr scatterview mageckflute mageck analysis
8 months ago by buffealo ▴ 110
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0
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553
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Comment: Comment: so many zero p-values resulted from mageck mle
8 months ago by buffealo ▴ 110
2
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2
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553
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so many zero p-values resulted from mageck mle
crispr mle mageck analysis
8 months ago by buffealo ▴ 110
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1
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2.7k
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Answer: Answer: DiffBind dba.count() BiocParallel error
2.0 years ago by buffealo ▴ 110
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2
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5.4k
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"Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'assay': subscript out of bounds" erro…
countingpeaks diffbind chipseq
updated 20 months ago by ★ 2.0k • written 2.0 years ago by ▴ 110
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0
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3.7k
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Comment: Comment: Why ranges of narrowPeak file and that of bed file are not identical
2.4 years ago by buffealo ▴ 110
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1
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2.6k
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Comment: Comment: merging .narrowPeak files with all of the columns they have
2.4 years ago by buffealo ▴ 110
0
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1
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2.6k
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Comment: Comment: merging .narrowPeak files with all of the columns they have
2.4 years ago by buffealo ▴ 110
0
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1
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2.6k
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Comment: Comment: merging .narrowPeak files with all of the columns they have
2.4 years ago by buffealo ▴ 110
2
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7
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2.6k
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merging .narrowPeak files with all of the columns they have
merging overlappinpeaks mergingchipseq narrowpeak chipseq
updated 2.4 years ago by ▴ 790 • written 2.4 years ago by ▴ 110
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0
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827
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Comment: Comment: Publicly Available ChIP-seq Samples Does not Overlap
2.4 years ago by buffealo ▴ 110
1
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3
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827
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Publicly Available ChIP-seq Samples Does not Overlap
publicdata chipseq overlappinpeaks chipseqoverlap
2.4 years ago by buffealo ▴ 110
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0
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2.4k
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Comment: Comment: ChIP-seq heatmap input bed file
2.5 years ago by buffealo ▴ 110
0
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1
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2.4k
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Comment: Comment: ChIP-seq heatmap input bed file
2.5 years ago by buffealo ▴ 110
4
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5
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2.4k
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ChIP-seq heatmap input bed file
bed chip-seq deeptools heatmap
updated 6 months ago by • 0 • written 2.5 years ago by ▴ 110
2
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0
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1.0k
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difference between treat_pileup and bdgcmp fold enrichment tracks macs2
chipseq chipsignals chipseqtracks chipseqanalysis IGVtracks
2.6 years ago by buffealo ▴ 110
0
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0
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42k
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Comment: Comment: How to extract unique mapped results from Bowtie2 bam results?
2.6 years ago by buffealo ▴ 110
2
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2
replies
1.1k
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not primary alignment flag filtering does not work
filtering samtools chipsamples chipseq chipseqanalysis
updated 2.6 years ago by ★ 1.2k • written 2.6 years ago by ▴ 110
0
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0
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870
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Comment: Comment: ChIP-seq peak number so high
2.6 years ago by buffealo ▴ 110
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3
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870
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ChIP-seq peak number so high
chipsamples peaknumber chipseq chipseqpeaks chipseqanalysis
2.6 years ago by buffealo ▴ 110
1
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0
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489
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How to proceed with multiple runs ChIP-seq
chipsamples seqruns chipseq sequencing chipseqanalysis
2.6 years ago by buffealo ▴ 110
0
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1
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1.1k
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Comment: Comment: Direct - indirect binding of a transcription factor in chip-seq analysis
2.7 years ago by buffealo ▴ 110
0
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1
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1.1k
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Comment: Comment: Direct - indirect binding of a transcription factor in chip-seq analysis
2.7 years ago by buffealo ▴ 110
5
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5
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1.1k
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Direct - indirect binding of a transcription factor in chip-seq analysis
directbinding indirectbinding trancriptionfactors chipseq chipseqanalysis
updated 2.7 years ago by ▴ 500 • written 2.7 years ago by ▴ 110
0
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1
reply
463
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Choosing the right sample among GEO datasets
GEOdatasets chipsamples celllinesamples chipseq chipseqanalysis
updated 2.7 years ago by 81k • written 2.7 years ago by ▴ 110
3
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3
replies
2.6k
views
narrowPeak or summits.bed for HOMER motif finding
motif motiffinding homer macs bedformat
updated 2.9 years ago by ★ 1.6k • written 2.9 years ago by ▴ 110
0
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1
reply
999
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Comment: Comment: MACS2 does not giving same result before and after chromosome extraction from ba
2.9 years ago by buffealo ▴ 110
2
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3
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999
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MACS2 does not giving same result before and after chromosome extraction from bam file
chromosome samtools extract peakcalling macs2
updated 2.9 years ago by 11k • written 2.9 years ago by ▴ 110
0
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0
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917
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Comment: Comment: ChIP-seq correlation with CNS
2.9 years ago by buffealo ▴ 110
0
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0
replies
670
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Comment: Comment: HOMER peak-motif relationship as direct-indirect binding
2.9 years ago by buffealo ▴ 110
0
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1
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917
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Comment: Comment: ChIP-seq correlation with CNS
2.9 years ago by buffealo ▴ 110
0
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2
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670
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HOMER peak-motif relationship as direct-indirect binding
homermotif directbinding indirectbinding
2.9 years ago by buffealo ▴ 110
0
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4
replies
917
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ChIP-seq correlation with CNS
cnv segmented chip
2.9 years ago by buffealo ▴ 110
0
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1
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2.6k
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Comment: Comment: narrowPeak or summits.bed for HOMER motif finding
2.9 years ago by buffealo ▴ 110
0
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0
replies
513
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HOMER average conservation information
homermotif peaks chip-seq annotation motifanalysis
2.9 years ago by buffealo ▴ 110
0
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0
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793
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Comment: Comment: UCSC "chromEnd larger than chrom chr21 size (46750259 > 46709983)" error
2.9 years ago by buffealo ▴ 110
2
votes
2
replies
793
views
UCSC "chromEnd larger than chrom chr21 size (46750259 > 46709983)" error
bed customtracks peakcall UCSC
updated 2.9 years ago by 141k • written 2.9 years ago by ▴ 110
0
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0
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965
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Comment: C: HOMER known motif is unpublished
3.2 years ago by buffealo ▴ 110
0
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2
replies
965
views
HOMER known motif is unpublished
ChIP-Seq motif HOMER motif finding known motifs
3.2 years ago by buffealo ▴ 110
39 results • Page 1 of 1
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