User: contacttomquinn

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Posts by contacttomquinn

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Converting Between Mass-Spec Database Search Result Formats (Specifically Pep.Xml To Id.Csv)
... Does anyone knows of a way to easily convert between the mass-spec database search result formats (specifically, converting from pep.XML to id.csv), preferably within the R environment? We have a series of pep.XML files which we would like to import into the Bioconductor package "isobar". However, t ...
R mass-spec written 6.2 years ago by contacttomquinn10 • updated 4.3 years ago by Biostar ♦♦ 20
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Retrieving Phylop Scores Using R
... I am looking for a method of retrieving phyloP scores (a per base measurement of evolutionary conservation) using R, given a set of chromosomal coordinates. I have found databases hosted by the UCSC Genome Browser, but they have proved very unwieldy. Does anyone know of any packages or other tricks ...
conservation R written 6.2 years ago by contacttomquinn10 • updated 6.2 years ago by Alex Reynolds29k

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