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Comment: Comment: Batch Effect
2.3 years ago by Matina ▴ 230
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0
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2.9k
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Comment: C: Ballgown plotTranscripts function
updated 3.7 years ago by 40k • written 7.6 years ago by ▴ 230
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1
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6.7k
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Comment: C: EdgeR-GLMs correcting for batch effects
updated 3.7 years ago by 40k • written 9.3 years ago by ▴ 230
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0
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3.5k
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Comment: C: EdgeR analysis with 3 conditions
updated 3.7 years ago by 40k • written 9.3 years ago by ▴ 230
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1
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2.3k
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Comment: C: TCGA RNA-Seq: are RSEM or Z-scores based expression comparable to each other?
4.5 years ago by Matina ▴ 230
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3.8k
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Comment: C: TCGAbiolinks TCGA-BRCA RNA-seq clinical data
5.3 years ago by Matina ▴ 230
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3.8k
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Comment: C: TCGAbiolinks TCGA-BRCA RNA-seq clinical data
5.3 years ago by Matina ▴ 230
0
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0
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3.8k
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Comment: C: TCGAbiolinks TCGA-BRCA RNA-seq clinical data
5.3 years ago by Matina ▴ 230
12
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6
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3.8k
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TCGAbiolinks TCGA-BRCA RNA-seq clinical data
TCGA BRCA TCGAbiolinks RNA-Seq
updated 5.3 years ago by 13k • written 5.3 years ago by ▴ 230
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878
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Comment: C: Similar samples in RNAseq
5.4 years ago by Matina ▴ 230
1
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5.1k
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Answer: A: PAM50 subtype classification by genefu
5.4 years ago by Matina ▴ 230
0
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0
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5.1k
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Comment: C: PAM50 subtype classification by genefu
5.4 years ago by Matina ▴ 230
1
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1
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5.1k
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Comment: C: PAM50 subtype classification by genefu
5.4 years ago by Matina ▴ 230
0
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1
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1.5k
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Comment: C: Differential Expression from Quantile-Norm Data
5.4 years ago by Matina ▴ 230
1
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0
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1.1k
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Comment: C: Deep exploration of an expression atlas
5.4 years ago by Matina ▴ 230
0
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1
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1.5k
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Comment: C: Differential Expression from Quantile-Norm Data
5.4 years ago by Matina ▴ 230
1
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2
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1.1k
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Comment: C: Deep exploration of an expression atlas
5.4 years ago by Matina ▴ 230
0
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1
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5.1k
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Comment: C: PAM50 subtype classification by genefu
5.4 years ago by Matina ▴ 230
0
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0
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3.1k
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Answer: A: Question about which option should I choose (reversely stranded or forward stran
5.4 years ago by Matina ▴ 230
1
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1
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2.7k
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Comment: C: RNAseq, indexing with STAR
5.5 years ago by Matina ▴ 230
2
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0
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2.0k
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Comment: C: Data preprocessing with background correction and normalization
5.5 years ago by Matina ▴ 230
1
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2
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2.0k
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Comment: C: Data preprocessing with background correction and normalization
5.5 years ago by Matina ▴ 230
0
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0
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1.4k
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Comment: C: How to rank differentially expressed genes (output from EBSeq)?
5.5 years ago by Matina ▴ 230
0
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1
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2.7k
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Comment: C: RNAseq, indexing with STAR
5.5 years ago by Matina ▴ 230
0
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1
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6.1k
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Comment: C: Limma design and makeContrasts
5.5 years ago by Matina ▴ 230
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1
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6.1k
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Comment: C: Limma design and makeContrasts
5.5 years ago by Matina ▴ 230
0
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0
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6.1k
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Comment: C: Limma design and makeContrasts
5.5 years ago by Matina ▴ 230
7
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9
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6.1k
views
Limma design and makeContrasts
limma design makeContrasts
updated 5.5 years ago by ★ 1.2k • written 5.5 years ago by ▴ 230
1
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1
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6.1k
views
Comment: C: Limma design and makeContrasts
5.5 years ago by Matina ▴ 230
0
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1
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3.8k
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Comment: C: How to align the same samples that were sequenced in multiple flow cells and lan
6.2 years ago by Matina ▴ 230
0
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0
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3.8k
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Comment: C: How to align the same samples that were sequenced in multiple flow cells and lan
6.2 years ago by Matina ▴ 230
5
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7
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3.8k
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How to align the same samples that were sequenced in multiple flow cells and lanes
RNA-Seq alignment
updated 2.0 years ago by 98k • written 6.2 years ago by ▴ 230
4
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2
replies
3.5k
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EdgeR analysis with 3 conditions
RNA-Seq edgeR
updated 24 months ago by 40k • written 9.3 years ago by ▴ 230
0
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0
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6.2k
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Comment: C: SVM caret training set confusion matrix
7.6 years ago by Matina ▴ 230
1
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1
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6.2k
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SVM caret training set confusion matrix
caret SVM classification
7.6 years ago by Matina ▴ 230
0
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2
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2.9k
views
Ballgown plotTranscripts function
ballgown trancript R plot RNA-Seq
updated 16 months ago by 40k • written 7.6 years ago by ▴ 230
1
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0
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8.4k
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Comment: C: Uninstall samtools 1.1 version
7.7 years ago by Matina ▴ 230
0
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0
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8.4k
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Comment: C: Uninstall samtools 1.1 version
7.7 years ago by Matina ▴ 230
4
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4
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8.4k
views
Uninstall samtools 1.1 version
samtools ubuntu uninstall
updated 16 months ago by 40k • written 7.7 years ago by ▴ 230
9
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3
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6.7k
views
EdgeR-GLMs correcting for batch effects
edgeR RNA-Seq Batch-Effects
updated 2.0 years ago by 40k • written 9.3 years ago by ▴ 230
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