User: omotosoolatunde01

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Posts by omotosoolatunde01

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Comment: C: script to Extract longest isoform from stringTie assembly
... I don't think this said link solved the problem based on some feedback I have seen on it ...
written 12 days ago by omotosoolatunde010
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Comment: C: How to extract the longest CDS from Homo_sapiens.GRCh38.cds.all.fa?
... Isn't MANE project incomplete yet? i actually looked at GRCh38.v0.93.select_ensembl_rna.fna.gz from the MANE, it's having less than 18, 000 cds, fewer than I would have thought. Concerning the link "How to extract the longest isoform from multi fasta file"; after running the code, all I could get w ...
written 12 days ago by omotosoolatunde010
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How to extract the longest CDS from Homo_sapiens.GRCh38.cds.all.fa?
... I downloaded this version of the All Human coding sequence (Homo_sapiens.GRCh38.cds.all.fa) from Ensembl but could not filter it. I initially thought I could find scripts online but I have not come across any so far; I need help on the following: (1) I want to extract the longest CDS transcript from ...
ensembl biopython python script written 13 days ago by omotosoolatunde010 • updated 12 days ago by Emily_Ensembl21k

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