User: freddy

gravatar for freddy
freddy40
Reputation:
40
Status:
New User
Location:
Last seen:
5 years, 8 months ago
Joined:
6 years, 1 month ago
Email:
j*************@yahoo.com

about me

Posts by freddy

<prev • 14 results • page 1 of 2 • next >
0
votes
1
answer
3.2k
views
1
answers
Comment: C: Sam To Bam
... When I try to ope the Bam file in text wrangler its just symbols with no useful information ...
written 5.8 years ago by freddy40
4
votes
1
answer
3.2k
views
1
answer
Sam To Bam
... I sequenced a mito genome using paired end method on the mi-seq I mapped all the reads back to reference gnome using BWA and got output of a Sam file I want to convert to BAM format but I am getting errors. This first line of my sam file is "@SQ SN:TAC111F LN:16753" all my following lines do not ha ...
alignment sam bam bwa written 5.8 years ago by freddy40 • updated 5.8 years ago by Ashutosh Pandey11k
2
votes
1
answer
2.6k
views
1
answer
Where I can download the program CNV-TV
... Does anyone know where I can download this program CNV-TV i got from the paper I read "CNV-TV: A robust method to discover copy number variation from short sequencing reads" ...
cnv written 5.8 years ago by freddy40 • updated 5.6 years ago by Istvan Albert ♦♦ 81k
0
votes
0
answers
1.3k
views
0
answers
Magnolya Cnv
... Im using Magnolya CNV detection and practicing with their manual. I'm at the step where I have to put thise command "abyss2ace reads/original_colored.fna \reads/perturbed_colored.fna contigs.fa KAlign.out > abyss.ace" I get an error "abyss2ace command not found" where can I find this command do ...
cnv written 5.8 years ago by freddy40
0
votes
2
answers
6.0k
views
2
answers
Comment: C: Bed File Format
... what about a mito genome short reads 300 bp in fastq format. Can I convert the fastq format into a Bed format ...
written 5.8 years ago by freddy40
0
votes
1
answer
1.2k
views
1
answer
Readdepth Directory
... I finally installed readDepth, but now I am confused on the directories I been following the direction on this website https://code.google.com/p/readdepth/wiki/Documentation its says to create three sub directories "reads/" "output/" "annotations/". Do I type these into the R terminal and where are ...
written 5.8 years ago by freddy40 • updated 5.8 years ago by Chris Miller21k
17
votes
2
answers
6.0k
views
7 follow
2
answers
Bed File Format
... What next gen file format can be converted to Bed format, and how. What does does it mean to sort a Bed file. ...
bed next-gen conversion format written 5.8 years ago by freddy40 • updated 9 months ago by nishadahiya0
0
votes
2
answers
7.4k
views
2
answers
(Closed) Samtools: Command Not Found
... I recently installed samtools made "make" the folder and got the samtools unix executable file I place it my /Users/josemaldonado/bin how do i specify that path so that I can execute the command from any directory. Thanks ...
samtools unix written 5.8 years ago by freddy40 • updated 5.8 years ago by Ashutosh Pandey11k
0
votes
3
answers
8.7k
views
3
answers
Comment: C: Bwa On Mac : How To Run It On Terminal
... But how do I specify the full path: ie. /Users//bin/bwa I talked to some and they told me I need to create a .bash profile I really don't understand ...
written 6.0 years ago by freddy40
4
votes
3
answers
8.7k
views
5 follow
3
answers
Bwa On Mac : How To Run It On Terminal
... Can any one help me please I want use BWA aligner, when I downloaded I cd into the file and made it and it create bwa program. Previously somebody made me bin folder in my home directory and placed the bwa program their, and they also did something with usr/local/bin. After they did this I was able ...
bwa written 6.0 years ago by freddy40 • updated 5.2 years ago by Biostar ♦♦ 20

Latest awards to freddy

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 693 users visited in the last hour