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Comment: C: Why does trinity and cufflink use bowtie to align reads back to assembled reads?
updated 5.8 years ago by 45k • written 11.2 years ago by 4.8k
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13k
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Comment: C: Best Peak Caller For Histone Modifications (Mainly H3K4Me3) Chip-Seq Datasets?
updated 5.8 years ago by 45k • written 14.1 years ago by 4.8k
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4.0k
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Comment: C: How To Process Large Chipseq Data?
updated 5.8 years ago by 45k • written 15.1 years ago by 4.8k
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1
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18k
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Comment: C: Can We Compare Two Different Rna-Seq Experiments?
updated 6.4 years ago by 45k • written 11.8 years ago by 4.8k
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0
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5.3k
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Comment: C: pareto scaling of RMA normalised values for Principle component analysis (PCA)
8.7 years ago by Mikael Huss 4.8k
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1
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5.3k
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Comment: C: pareto scaling of RMA normalised values for Principle component analysis (PCA)
8.8 years ago by Mikael Huss 4.8k
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0
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8.1k
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Comment: C: How to retrieve protein sequences in Diamond?
9.3 years ago by Mikael Huss 4.8k
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8.1k
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Comment: C: How to retrieve protein sequences in Diamond?
9.3 years ago by Mikael Huss 4.8k
1
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0
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21k
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Comment: Comment: Is There Any Other Method For Isoform-Level Differential Expression Analysis Exc
updated 2.7 years ago by 45k • written 10.0 years ago by 4.8k
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6.8k
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Comment: Comment: The new era of bioinformatics: simple and fast tools, fewer and more informative
updated 2.5 years ago by 45k • written 10.2 years ago by 4.8k
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0
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3.7k
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Comment: C: Need suggestions for rna-seq pipeline.
10.3 years ago by Mikael Huss 4.8k
1
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0
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8.3k
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Comment: Comment: "big" Data csv search
updated 3.2 years ago by 45k • written 10.4 years ago by 4.8k
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1
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8.3k
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Comment: C: "big" Data csv search
10.4 years ago by Mikael Huss 4.8k
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1
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6.0k
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Comment: Comment: Comparing gene expression profiles between species
updated 3.3 years ago by 45k • written 10.5 years ago by 4.8k
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1
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6.0k
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Comment: C: Comparing gene expression profiles between species
10.5 years ago by Mikael Huss 4.8k
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1
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3.8k
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Comment: C: Should I remove host RNA from host-pathogen metatranscriptomic data
10.5 years ago by Mikael Huss 4.8k
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1
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3.8k
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Comment: C: Should I remove host RNA from host-pathogen metatranscriptomic data
10.5 years ago by Mikael Huss 4.8k
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1
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18k
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Comment: C: Normalization Procedure For The Rna-Seq Data Based On Counts
10.6 years ago by Mikael Huss 4.8k
1
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1
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13k
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Comment: Comment: DESeq2 very high p-values and padj
updated 3.6 years ago by 45k • written 10.9 years ago by 4.8k
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0
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6.8k
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Comment: C: Homer: Different Outputs
11.1 years ago by Mikael Huss 4.8k
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0
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3.9k
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Comment: C: What Could Be The Reason For Spliced Alignments In Chip-Seq Data?
11.1 years ago by Mikael Huss 4.8k
1
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0
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24k
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Comment: C: Which software do you use for RNA-seq data quality control?
11.1 years ago by Mikael Huss 4.8k
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1
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3.9k
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Comment: C: RNA-Seq: can one implicate viruses if unmapped reads map to virus sequences?
11.1 years ago by Mikael Huss 4.8k
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1
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3.9k
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Comment: C: RNA-Seq: can one implicate viruses if unmapped reads map to virus sequences?
11.1 years ago by Mikael Huss 4.8k
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0
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5.2k
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Comment: C: Why does trinity and cufflink use bowtie to align reads back to assembled reads?
11.2 years ago by Mikael Huss 4.8k
0
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0
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3.9k
views
Comment: C: What Could Be The Reason For Spliced Alignments In Chip-Seq Data?
11.2 years ago by Mikael Huss 4.8k
0
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1
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14k
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
11.3 years ago by Mikael Huss 4.8k
1
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0
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14k
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
11.3 years ago by Mikael Huss 4.8k
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0
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14k
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
11.3 years ago by Mikael Huss 4.8k
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0
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14k
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
11.3 years ago by Mikael Huss 4.8k
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0
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4.4k
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Comment: C: Cufflinks Skips Loci, Marks With Hidata
11.4 years ago by Mikael Huss 4.8k
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1
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4.4k
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Comment: C: Cufflinks Skips Loci, Marks With Hidata
11.4 years ago by Mikael Huss 4.8k
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0
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4.5k
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Comment: C: Where To Find Encode Dnase I Footprint Data
11.4 years ago by Mikael Huss 4.8k
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0
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9.6k
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Comment: C: How To Improve Whole Genome Assembly Quality
11.4 years ago by Mikael Huss 4.8k
1
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0
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108k
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Comment: C: How To Calculate Fpkm (Fragments Per Kilobase Of Exon Per Million Fragments Mapp
11.4 years ago by Mikael Huss 4.8k
1
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0
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4.0k
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Comment: C: What Are The Main Advantages Of Ngs Over Arrays In Transcriptomics?
11.5 years ago by Mikael Huss 4.8k
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0
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10k
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Comment: C: Rna-Seq: Treat Samples As Biological Replicates?
11.5 years ago by Mikael Huss 4.8k
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0
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4.5k
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Comment: C: Determining Most Diagnostic Differentially Expressed Genes
11.6 years ago by Mikael Huss 4.8k
1
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0
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3.8k
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Comment: C: Fast Rna-Seq Exon Count Calculation
11.7 years ago by Mikael Huss 4.8k
1
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2
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3.8k
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Comment: C: Fast Rna-Seq Exon Count Calculation
11.7 years ago by Mikael Huss 4.8k
2
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0
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5.3k
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Comment: C: Does Anyone Know If One Can Access The Seqc Data
11.7 years ago by Mikael Huss 4.8k
0
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0
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5.3k
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Comment: C: Does Anyone Know If One Can Access The Seqc Data
11.7 years ago by Mikael Huss 4.8k
0
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1
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5.3k
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Comment: C: Does Anyone Know If One Can Access The Seqc Data
11.7 years ago by Mikael Huss 4.8k
0
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0
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20k
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Comment: C: Software To Find Overlaps Of Chip-Seq Peaks In Multiple Samples.
11.8 years ago by Mikael Huss 4.8k
0
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1
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20k
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Comment: C: Software To Find Overlaps Of Chip-Seq Peaks In Multiple Samples.
11.8 years ago by Mikael Huss 4.8k
0
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0
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9.5k
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Comment: C: Tools For Analysis Allele Specific Expression In Rna-Seq Data?
11.8 years ago by Mikael Huss 4.8k
0
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0
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2.6k
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Comment: C: Some Software That Can Assemble The Dna Sequence From Ngs Even If It Is From Mix
11.8 years ago by Mikael Huss 4.8k
0
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0
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11k
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Comment: C: Minimum Or Optimal Rpkm Value To Find If A Transcript Is Significant
11.8 years ago by Mikael Huss 4.8k
1
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1
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11k
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Comment: C: Minimum Or Optimal Rpkm Value To Find If A Transcript Is Significant
11.8 years ago by Mikael Huss 4.8k
1
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1
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6.5k
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Comment: C: Is It A Good Idea To Trim Rna-Seq Reads Or Just Remove N'S?
11.8 years ago by Mikael Huss 4.8k
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