User: suleymanvural

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United States
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2 months, 1 week ago
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4 years, 9 months ago
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Posts by suleymanvural

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Methylation Data Interpretation and Dychotomization
... Not a simple task. See the post here https://www.biostars.org/p/88001/#88079 ...
written 4 months ago by suleymanvural40
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Comment: C: TCGA controlled data access
... This is not true, TCGA is a public source. I got all the data without paying anything. Only part of it requires controlled access. ...
written 15 months ago by suleymanvural40
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TCGA controlled data access
... Hi, I would like to download controlled access TCGA BRCA data both from tcga data portal (vcf files) and cghub (bam files). As far as I read, I need to apply for data access request with PHS000178 to dbgap since they give the data access approvals. TCGA have many types of data, how do we apply for a ...
tcga next-gen controlled access dbgap sequencing written 3.6 years ago by suleymanvural40 • updated 15 months ago by biomanoj0
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Answer: A: Predicted Impact Of Indels?
... There is also this one, goes beyond annotating the variant even for frameshifting indels Predciting the effects of frameshifting indels And this one, but this can only make effect prediction for non-frameshifting indels Provean ...
written 4.3 years ago by suleymanvural40
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Answer: A: Question About Mergesegment.Pl In Varscan 2
... I had the same problem, then i removed $sample from line 134 as he said, which initially looks like this my ($id, $sample, $chrom, $chr_start, $chr_stop, $num_mark, $seg_mean, $bstat, $p_value, $lcl, $ucl) = split(/\s+/, $line); Still gives this error Use of uninitialized value $stats{"num_merged_ ...
written 4.7 years ago by suleymanvural40
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Comment: C: Questions About Mergesegment.Pl
... it actually accepts 4 column file, the format above is correct ...
written 4.7 years ago by suleymanvural40

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Popular Question 3.6 years ago, created a question with more than 1,000 views. For TCGA controlled data access

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