User: raj.gzra

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raj.gzra30
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Posts by raj.gzra

<prev • 18 results • page 1 of 2 • next >
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Answer: A: Error in maker (gene prediction)
... Yes, I just solved the issue. And yes, you are right. The problem was with gff file. Thanks for reply! ...
written 3.1 years ago by raj.gzra30
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Error in maker (gene prediction)
... Hello Everyone, Does anyone know about below error in maker annotation : > ERROR: Non-unique top level ID While this is technically legal in > GFF3, it usually indicates a poorly fomatted GFF3 file (perhaps you > tried to merge two GFF3 files without accounting for unique IDs). > MAKER ...
software error gene written 3.1 years ago by raj.gzra30
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Comment: C: How To Remove Contaminated Scaffold From Genome
... no i did not assemble. i got assembled genome. do you know how to remove contaminated scaffold ? ...
written 6.0 years ago by raj.gzra30
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How To Remove Contaminated Scaffold From Genome
... hi everyone i have a fungal genome and i want to know that if anybody know, how to remove contaminated scaffolds from genome. if i do BLAST my genome sequences with contaminated species genome and i found hits. anybody know that, on what basis i have to remove that hits from my scaffold or i have to ...
genome written 6.0 years ago by raj.gzra30
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Assembly Of Illumina
... hello everyone i have a genome which is already assembled and it has contamination so we remove contamination from this genome. and we again resequenced the genome but yet we did not assemble. both data is of same species. one is assembled genome data in form of scaffold. and another is raw reads of ...
assembly illumina written 6.1 years ago by raj.gzra30
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Comment: C: Calculating Rpkm For Rna-Seq Data Including Several Samples Each Condition
... hi, how did u calculate RPKM values? do you have single end data? i also want to know to calculate RPKM value.reply urgent. thank you in advance ...
written 6.2 years ago by raj.gzra30
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Comment: C: Are Fpkm And Rpkm Values Equivalent?
... thanks ..dpryan79 ...
written 6.2 years ago by raj.gzra30
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Are Fpkm And Rpkm Values Equivalent?
... hi everyone Cufflink gives FPKM value whether it is single end data or paired end data. does FPKM value which is given by cufflink is equavalent to RPKM value for single end data? or if i am wrong does cufflink gives RPKM value? thank you ...
rpkm fpkm written 6.2 years ago by raj.gzra30 • updated 6.2 years ago by Devon Ryan93k
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Comment: C: How To Get Ref.Gtf File For Cufflink
... can i make gtf file by blast against genome with transcriptome??? ...
written 6.2 years ago by raj.gzra30
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Comment: C: How To Get Ref.Gtf File For Cufflink
... thank you nikolay. but i have genome of fungus which is unannotated yet and newly sequenced and assembled. then how to download files from Ensemble>> ...
written 6.2 years ago by raj.gzra30

Latest awards to raj.gzra

Popular Question 6.0 years ago, created a question with more than 1,000 views. For Rna-Seq Analysis Of 454/Roche Data
Popular Question 6.0 years ago, created a question with more than 1,000 views. For Are Fpkm And Rpkm Values Equivalent?
Popular Question 6.0 years ago, created a question with more than 1,000 views. For How To Get Ref.Gtf File For Cufflink
Popular Question 6.0 years ago, created a question with more than 1,000 views. For How To Remove Contaminated Scaffold From Genome
Popular Question 6.0 years ago, created a question with more than 1,000 views. For Mapping Of Transcripts Reads Back To Transcriptome

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