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Comment: Comment: Is it possible to convert 3 prime sequencing read counts into TPMs?
6 months ago by Mat ▴ 60
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2
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437
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Is it possible to convert 3 prime sequencing read counts into TPMs?
RNAseq TPM expression
6 months ago by Mat ▴ 60
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3.6k
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Comment: Comment: Salmon alignment based quantification
7 months ago by Mat ▴ 60
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1
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535
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High amount of intronic/intergenic reads in SMARTer stranded total bulk RNAseq
RNA-seq DNA SMARTer
updated 7 months ago by 43k • written 7 months ago by ▴ 60
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1.4k
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Comment: Comment: General approach for unsupervised clustering of bulk RNAseq samples and deriving
14 months ago by Mat ▴ 60
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3
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1.4k
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General approach for unsupervised clustering of bulk RNAseq samples and deriving/applying gene signature
clustering RNAseq DESeq2
14 months ago by Mat ▴ 60
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0
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1.4k
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Comment: Comment: General approach for unsupervised clustering of bulk RNAseq samples and deriving
14 months ago by Mat ▴ 60
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1
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481
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Methods to identify genes/pathways that cause upregulation of specific gene of interest
Pathway RNAseq
updated 2.1 years ago by ▴ 20 • written 2.1 years ago by ▴ 60
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1
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1.3k
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How to remove nextera with fastp
rnaseq nextera fastp ngs
updated 2.4 years ago by 100k • written 2.4 years ago by ▴ 60
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2
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1.7k
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Batch effects from sequencing samples accross multiple flow cells.
rna-seq batch batch-effect sequencing
updated 6 days ago by 43k • written 2.9 years ago by ▴ 60
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1
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1.5k
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Comment: C: Duplication rate differs up to 30% from that of Fastqc for single end reads
3.5 years ago by Mat ▴ 60
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3
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1.5k
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Duplication rate differs up to 30% from that of Fastqc for single end reads
RNA-Seq fastqc fastp
3.5 years ago by Mat ▴ 60
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0
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5.2k
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Answer: A: Downloading synonyms for dbSNP rsids
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 60
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0
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4.6k
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Comment: C: Keep Format and Individual fields when annotating VCF with VEP
5.0 years ago by Mat ▴ 60
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0
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1.3k
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Variant training set for Zebrafish to apply GATK VariantRecalibrator
SNP Zebrafish GATK Genotyping-by-sequencing NGS
5.7 years ago by Mat ▴ 60
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1
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3.1k
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Answer: A: How to get the beginning and end-positions of a QTL-interval after doing QTL-ana
6.5 years ago by Mat ▴ 60
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0
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1.5k
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Is allele switching necessary before QTL mapping can be performed?
QTL mapping
6.7 years ago by Mat ▴ 60
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2.4k
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Comment: C: QTL mapping vs. Association mapping for bi-parental crosses
6.9 years ago by Mat ▴ 60
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2
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2.4k
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QTL mapping vs. Association mapping for bi-parental crosses
qtl mapping
6.9 years ago by Mat ▴ 60
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1
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12k
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Comment: C: Flip Gwas Data To Positive Strand (Hg19 Build 37)
8.7 years ago by Mat ▴ 60
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2
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12k
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Comment: C: Flip Gwas Data To Positive Strand (Hg19 Build 37)
8.7 years ago by Mat ▴ 60
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0
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1.9k
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Where To Find Pre-Computed Gene-To-Gene-Similarities Based On Gene Ontology (Go)
go gene ontology similarity
10.2 years ago by Mat ▴ 60
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2
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3.8k
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Access Abstract From Pubmed Using Bio::Db::Eutilities
perl bioperl xml pubmed eutils
updated 2.4 years ago by 43k • written 10.5 years ago by ▴ 60
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