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Comment: C: Extracting reads mapping to CDS regions but not the first 45bp after ATG
4.7 years ago by Adrian Pelin ★ 2.6k
0
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1
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1.6k
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Comment: C: Extracting reads mapping to CDS regions but not the first 45bp after ATG
4.7 years ago by Adrian Pelin ★ 2.6k
4
votes
7
replies
1.6k
views
Extracting reads mapping to CDS regions but not the first 45bp after ATG
RNA-Seq bed bam
updated 4.7 years ago by 161k • written 4.7 years ago by ★ 2.6k
0
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0
replies
759
views
Mapping short 26-32nt RPF reads to human genome
RNA-Seq Ribosomal profiling Mapping RPF
4.7 years ago by Adrian Pelin ★ 2.6k
0
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1
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2.0k
views
Comment: C: From per bp coverage to average coverage in 10bp intervals
4.7 years ago by Adrian Pelin ★ 2.6k
0
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1
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2.0k
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Comment: C: From per bp coverage to average coverage in 10bp intervals
4.7 years ago by Adrian Pelin ★ 2.6k
0
votes
1
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2.0k
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Comment: C: From per bp coverage to average coverage in 10bp intervals
4.7 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
2.0k
views
Comment: C: From per bp coverage to average coverage in 10bp intervals
4.7 years ago by Adrian Pelin ★ 2.6k
0
votes
0
replies
2.0k
views
Comment: C: From per bp coverage to average coverage in 10bp intervals
4.7 years ago by Adrian Pelin ★ 2.6k
3
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9
replies
2.0k
views
From per bp coverage to average coverage in 10bp intervals
genome DNA-seq bam
updated 4.7 years ago by 35k • written 4.7 years ago by ★ 2.6k
0
votes
1
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1.7k
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Comment: C: HISAT2/stringtie: intron impact on expression
4.7 years ago by Adrian Pelin ★ 2.6k
0
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1
reply
1.7k
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Comment: C: HISAT2/stringtie: intron impact on expression
4.7 years ago by Adrian Pelin ★ 2.6k
0
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5
replies
1.7k
views
HISAT2/stringtie: intron impact on expression
HISAT2 stringtie TPM RNA-seq mRNA Expression
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ★ 2.6k
0
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0
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801
views
Comment: C: Generating Interaction map
4.9 years ago by Adrian Pelin ★ 2.6k
3
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2
replies
801
views
Generating Interaction map
cytoscape interactome R
updated 4.9 years ago by 27k • written 4.9 years ago by ★ 2.6k
4
votes
5
replies
4.2k
views
Perl Script To Retrieve All Orf?
orf perl
updated 5.0 years ago by ▴ 20 • written 10.1 years ago by ★ 2.6k
0
votes
1
reply
11k
views
Comment: C: HISAT2 output direct to bam
updated 5.0 years ago by 82k • written 5.0 years ago by ★ 2.6k
12
votes
6
replies
11k
views
HISAT2 output direct to bam
RNA-Seq samtools
updated 2.7 years ago by 82k • written 5.0 years ago by ★ 2.6k
0
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0
replies
14k
views
Comment: C: hisat2 command line fastq to bam
5.0 years ago by Adrian Pelin ★ 2.6k
0
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0
replies
1.7k
views
Comment: C: Extracting sequence and annotation of a particular gene
5.1 years ago by Adrian Pelin ★ 2.6k
1
vote
2
replies
1.7k
views
Extracting sequence and annotation of a particular gene
Annotation GTF
updated 5.1 years ago by 82k • written 5.1 years ago by ★ 2.6k
0
votes
0
replies
1.7k
views
Comment: C: Virus RNA Seq reads mapping with salmon
5.1 years ago by Adrian Pelin ★ 2.6k
1
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1
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1.7k
views
Answer: A: Virus RNA Seq reads mapping with salmon
5.1 years ago by Adrian Pelin ★ 2.6k
0
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0
replies
6.2k
views
Comment: C: How to get percent identity from bam file ?
5.2 years ago by Adrian Pelin ★ 2.6k
1
vote
0
replies
37k
views
Comment: C: BLAST, setting maximum number of hits
updated 5.2 years ago by 43k • written 9.2 years ago by ★ 2.6k
2
votes
2
replies
1.1k
views
Comparing NCI-60 transcriptome with another variable to determine genes that correlate
RNA-Seq NCI60
updated 5.4 years ago by ▴ 350 • written 5.4 years ago by ★ 2.6k
1
vote
0
replies
2.3k
views
Comment: C: bash & quickGO to download gene symbols of a GO term
5.4 years ago by Adrian Pelin ★ 2.6k
2
votes
4
replies
2.3k
views
bash & quickGO to download gene symbols of a GO term
Annotations GO bash
updated 5.4 years ago by 7.5k • written 5.4 years ago by ★ 2.6k
0
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0
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2.3k
views
Comment: C: bash & quickGO to download gene symbols of a GO term
5.4 years ago by Adrian Pelin ★ 2.6k
6
votes
7
replies
2.1k
views
RNA-seq analysis of virally infected cells
RNA-Seq virus host
updated 5.5 years ago by 20 • written 5.7 years ago by ★ 2.6k
6
votes
7
replies
4.7k
views
How To Check For Ploidy Using Ngs Only?
ngs mapping
updated 5.6 years ago by ▴ 220 • written 10.2 years ago by ★ 2.6k
2
votes
8
replies
4.0k
views
Demultiplexing SRA data
SRA NGS Illumina multiplex
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 2.6k
0
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1
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4.0k
views
Comment: C: Demultiplexing SRA data
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 2.6k
1
vote
0
replies
40k
views
Comment: C: Converting Bam To Fastq
updated 5.6 years ago by 43k • written 9.3 years ago by ★ 2.6k
0
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1
reply
2.1k
views
Comment: C: RNA-seq analysis of virally infected cells
5.7 years ago by Adrian Pelin ★ 2.6k
0
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1
reply
2.1k
views
Comment: C: RNA-seq analysis of virally infected cells
5.7 years ago by Adrian Pelin ★ 2.6k
1
vote
0
replies
2.1k
views
Comment: C: RNA-seq analysis of virally infected cells
5.7 years ago by Adrian Pelin ★ 2.6k
1
vote
1
reply
3.7k
views
Answer: A: FPKM matrix after stringtie using ballgown
5.7 years ago by Adrian Pelin ★ 2.6k
11
votes
8
replies
6.8k
views
Annotating/Finding "NNNNNN" scaffold gaps in genome assembly
bed NGS scaffolding Assembly
updated 18 months ago by 43k • written 8.7 years ago by ★ 2.6k
4
votes
8
replies
3.1k
views
How To Phase Haplotypes In A Highly Polymorphic Genome
vcf variant-calling
updated 6.2 years ago by 20 • written 10.3 years ago by ★ 2.6k
0
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0
replies
4.5k
views
Comment: C: Anybody Managed To Make Inparanoid Work?
6.4 years ago by Adrian Pelin ★ 2.6k
0
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0
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2.0k
views
Comment: C: Detecting junctions from reads spanning large indels
6.5 years ago by Adrian Pelin ★ 2.6k
0
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1
reply
2.0k
views
Comment: C: Detecting junctions from reads spanning large indels
6.5 years ago by Adrian Pelin ★ 2.6k
3
votes
5
replies
2.0k
views
Detecting junctions from reads spanning large indels
DNA-seq sam
updated 6.5 years ago by 161k • written 6.5 years ago by ★ 2.6k
0
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1
reply
2.0k
views
Comment: C: Filter sam file to remove reads with large deletions
6.5 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
4.1k
views
Comment: C: bedtools merge - removing features completly overlapped by other features
6.6 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
4.1k
views
Comment: C: bedtools merge - removing features completly overlapped by other features
6.6 years ago by Adrian Pelin ★ 2.6k
0
votes
1
reply
4.1k
views
Comment: C: bedtools merge - removing features completly overlapped by other features
6.6 years ago by Adrian Pelin ★ 2.6k
0
votes
2
replies
4.2k
views
Comment: C: Phylogeny: tree branch length on a log scale
6.7 years ago by Adrian Pelin ★ 2.6k
1
vote
4
replies
4.2k
views
Phylogeny: tree branch length on a log scale
FigTree phylogeny
6.7 years ago by Adrian Pelin ★ 2.6k
509 results • Page 2 of 11
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