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biomaRt: Timeout on getBM().
r biomart ensembl
updated 12 days ago by ★ 2.0k • written 2.8 years ago by ▴ 40
0
votes
0
replies
335
views
How to infer gene-level CNV status from ICGC data?
number CNV copy ICGC
16 months ago by lincaijin1994 ▴ 40
1
vote
4
replies
1.4k
views
How to interpret "pseudo count" in copy number data from CCLE?
number copy CNV
updated 19 months ago by • 0 • written 2.3 years ago by ▴ 40
0
votes
1
reply
498
views
Validate mutations from WGS using RNA-seq bam files in IGV?
RNA-Seq WGS IGV
updated 21 months ago by 3.2k • written 22 months ago by ▴ 40
1
vote
1
reply
542
views
How to understand or define some terms regarding copy number alterations?
number copy CNV
updated 2.0 years ago by ▴ 30 • written 2.4 years ago by ▴ 40
0
votes
0
replies
305
views
Should Combat be performed if I want to compare a signature score between TCGA RNA-seq and our own RNA-seq data?
Batch combat Effect RNA-Seq
2.1 years ago by lincaijin1994 ▴ 40
0
votes
0
replies
341
views
How to deal with it when EC50 is zero?
IC50 CTRP EC50
2.2 years ago by lincaijin1994 ▴ 40
1
vote
0
replies
492
views
How to run GISTIC 2.0 using CCLE segment file?
CNV copy GISTIC number
2.2 years ago by lincaijin1994 ▴ 40
0
votes
1
reply
546
views
RNA sequencing data and batch effect
RNA-Seq Batch combat Effect
updated 2.3 years ago by 82k • written 2.3 years ago by ▴ 40
0
votes
0
replies
441
views
How to determine the cutoff of hypermutation?
TMB hypermutation
2.5 years ago by lincaijin1994 ▴ 40
0
votes
1
reply
1.5k
views
How maftools oncoplot classifies variant classifications
maftools oncoplot complexheatmap
updated 2.5 years ago by ★ 1.4k • written 3.1 years ago by ▴ 40
0
votes
0
replies
795
views
Tumor mutation burden calculation based on bed file?
TMB bed
2.6 years ago by lincaijin1994 ▴ 40
2
votes
3
replies
1.6k
views
How to subset vcf by sample and write?
bcftools vcf
updated 2.7 years ago by ▴ 480 • written 2.7 years ago by ▴ 40
2
votes
4
replies
1.0k
views
How to identify variants in the last or penultimate exons?
mapping variants exon
updated 2.8 years ago by 23k • written 2.8 years ago by ▴ 40
0
votes
1
reply
891
views
Duplicate ID in plink
GWAS plink
updated 2.9 years ago by 2.8k • written 2.9 years ago by ▴ 40
1
vote
1
reply
653
views
How to identify first codon (Methionine) misssense variants?
Mutation ANNOVAR Missense
updated 3.0 years ago by 161k • written 3.0 years ago by ▴ 40
0
votes
4
replies
1.1k
views
How to plot a image like this.
Genome R plot Cancer
updated 2.8 years ago by 43k • written 3.0 years ago by ▴ 40
0
votes
0
replies
889
views
How maftools oncoplot deal with Splice_Site mutation
maftools oncoplot SNV Splicing
3.1 years ago by lincaijin1994 ▴ 40
2
votes
2
replies
1.2k
views
Difference between read depth, allelic depth and bam readcounts
bam vcf sequencing genotype
updated 3.1 years ago by ▴ 10 • written 3.1 years ago by ▴ 40
19 results • Page 1 of 1
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