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3
votes
7
replies
4.1k
views
How to get input for provean from vcf files annotated by snpeff?
snpeff vcf provean
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 440
0
votes
1
reply
4.7k
views
Comment: C: Why does trinity and cufflink use bowtie to align reads back to assembled reads?
updated 4.3 years ago by 43k • written 9.9 years ago by ▴ 440
8
votes
3
replies
18k
views
Answer: A: Bwa Mem Have Different Alignment Result When Using Different Threads
updated 4.5 years ago by 43k • written 10.2 years ago by ▴ 440
46
votes
31
replies
18k
views
15 follow
Bwa Mem Have Different Alignment Result When Using Different Threads
updated 5.0 years ago by ★ 2.6k • written 10.3 years ago by ▴ 440
15
votes
4
replies
21k
views
How does sliding window work in Trimmomatic
Trimmomatic illumina
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 440
0
votes
0
replies
6.3k
views
Comment: C: Augustus install mac
7.4 years ago by shl198 ▴ 440
4
votes
2
replies
2.3k
views
Is checking clustering of technical replicates necessary for RNAseq?
RNA-Seq technical-replicates
updated 22 months ago by 43k • written 9.0 years ago by ▴ 440
5
votes
2
replies
2.3k
views
relationship between coverage and expression level in RNAseq
RNA-Seq depth expression experiment design
updated 9.1 years ago by ▴ 480 • written 9.1 years ago by ▴ 440
0
votes
1
reply
4.1k
views
Comment: C: How to get input for provean from vcf files annotated by snpeff?
9.4 years ago by shl198 ▴ 440
0
votes
1
reply
1.8k
views
detect SNPs using DNAseq fastq files which were used to assemble the genome
SNP DNA-seq Assembly
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 440
0
votes
1
reply
7.4k
views
Comment: Comment: Why is pre formatted refseq database larger than nt database in blastdb?
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 440
17
votes
4
replies
7.4k
views
Why is pre formatted refseq database larger than nt database in blastdb?
blast refseq nt
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 440
0
votes
0
replies
3.3k
views
Comment: Comment: Bowtie2 treats reads as not mapping even if the reads have exact same sequences
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 440
0
votes
1
reply
3.3k
views
Comment: C: Bowtie2 treats reads as not mapping even if the reads have exact same sequences
9.8 years ago by shl198 ▴ 440
5
votes
4
replies
3.3k
views
Bowtie2 treats reads as not mapping even if the reads have exact same sequences with reference?
bowtie2 quality tophat RNA-Seq
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 440
0
votes
0
replies
8.8k
views
Comment: C: Can bowtie2-build index for gzipped file?
9.8 years ago by shl198 ▴ 440
1
vote
1
reply
8.8k
views
Comment: Comment: Can bowtie2-build index for gzipped file?
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 440
4
votes
5
replies
8.8k
views
Can bowtie2-build index for gzipped file?
bowtie2 bowtie2-build gzip gunzip
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 440
1
vote
4
replies
4.0k
views
How To Get Genome Name And Genome Type With Gi Number And Accession Number In Python?
biopython
updated 9.9 years ago by 20 • written 10.2 years ago by ▴ 440
1
vote
3
replies
4.7k
views
Why does trinity and cufflink use bowtie to align reads back to assembled reads?
RNA-Seq trinity cufflink bowtie
9.9 years ago by shl198 ▴ 440
24
votes
2
replies
13k
views
Run Makeblastdb For Compressed File
blast+ makeblastdb
updated 10.0 years ago by 49k • written 10.0 years ago by ▴ 440
3
votes
1
reply
4.3k
views
Align Paired End Reads Using Blast
blast paired-end ngs
updated 10.1 years ago by 100k • written 10.1 years ago by ▴ 440
0
votes
1
reply
18k
views
Comment: C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.2 years ago by shl198 ▴ 440
3
votes
1
reply
4.3k
views
Can Igv View Blast+ Output File?
blast+ igv ngs
updated 10.2 years ago by 100k • written 10.2 years ago by ▴ 440
0
votes
0
replies
18k
views
Comment: C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.3 years ago by shl198 ▴ 440
0
votes
0
replies
18k
views
Comment: C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.3 years ago by shl198 ▴ 440
2
votes
1
reply
18k
views
Comment: C: Bwa Mem Have Different Alignment Result When Using Different Threads
10.3 years ago by shl198 ▴ 440
0
votes
0
replies
6.4k
views
Comment: C: The Reference Genome Of The Reading In Bam File
10.5 years ago by shl198 ▴ 440
0
votes
1
reply
6.4k
views
Comment: C: The Reference Genome Of The Reading In Bam File
10.5 years ago by shl198 ▴ 440
2
votes
4
replies
6.4k
views
The Reference Genome Of The Reading In Bam File
r bam alignment
updated 10.5 years ago by 12k • written 10.5 years ago by ▴ 440
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