User: lapis44

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lapis4420
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20
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New User
Location:
United States
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3 months, 4 weeks ago
Joined:
5 years, 7 months ago
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Posts by lapis44

<prev • 12 results • page 1 of 2 • next >
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Gene ontology analysis
... Hi all, I recently put a list of 90 differentially expressed genes into DAVID bioinformatics software for gene ontology enrichment analysis. I received an output of about 10 pathway terms, each for which the following information was provided: - Number of genes in that pathway term - Benjamini val ...
enrichment go ontology written 10 months ago by lapis4420 • updated 10 months ago by harish200
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How to advertise new bioinformatics R package
... Planning to publish a new R package for analyzing and visualizing high throughput data. I was curious how students like myself involved (graduate students and/or post-doctoral students) could help advertise this package to the appropriate potential user community. One thing I can think of is maybe t ...
software R chip-seq written 15 months ago by lapis4420 • updated 12 months ago by SHUFE Media0
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Comment: C: Software to determine whether genes are related to cancer
... Thanks for all your insight!! ...
written 5.2 years ago by lapis4420
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Comment: C: Software to determine whether genes are related to cancer
... This is pretty incredible. Thank you! I input 263 genes into DAVID, and did the Pathways --> KEGG_PATHWAY. I got 15 genes listed: 8 were in "pathways in cancer", 4 in "prostate cancer", and 3 in "notch signaling pathway". I am not sure how to determine if this is all just false discovery rate, or ...
written 5.2 years ago by lapis4420
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Comment: C: Software to determine whether genes are related to cancer
... Wow, thanks for the information. I will look into it! ...
written 5.2 years ago by lapis4420
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Comment: C: Software to determine whether genes are related to cancer
... Thank you! I have used DAVID before.. but could I input a set of human genes and determine the percent that may be related to cancer in humans? I don't know of a way to do that in DAVID. ...
written 5.2 years ago by lapis4420
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Software to determine whether genes are related to cancer
... I have a list of genes that showed up as differentially expressed between patients and controls. I have seen in papers, people performing analyses to see what fraction of genes in a list are related to cancer, using "Ingenuity Pathway Analysis" etc. I have been unable to use this software in that m ...
gene rna-seq written 5.2 years ago by lapis4420 • updated 5.2 years ago by Prakki Rama2.3k
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Construct DAG network from DESEQ2 DEGs
... I am using DESeq2 to generate a list of differentially expressed genes from RNA-seq data of one healthy patient and one diseased patient. What are additional bioinformatic tools of interest that I could apply to this list of DEGs? I would like to construct a network from this data, but is that pos ...
network deseq2 gominer rna-seq deg written 5.2 years ago by lapis4420
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Comment: C: Obtain List Of Small Peptides With Nmr Structure In Tfe And H20
... Thank you Neilfws! If you know, what about trying to find a peptide with determined structures in NMR for both aqueous and less-polar solutions? In the link I provided in my comment to my original post above, does that peptide have two structures, since it seems to report so? ...
written 5.6 years ago by lapis4420
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Comment: C: Obtain List Of Small Peptides With Nmr Structure In Tfe And H20
... I am especially interested in a situation like this (http://www.rcsb.org/pdb/explore/explore.do?structureId=2MCE), where they report the "solution structure of [the peptide in NMR] in both aqueous and membrane mimetic solvents". But I do not see where I can download the two separate structures of th ...
written 5.6 years ago by lapis4420

Latest awards to lapis44

Popular Question 5.2 years ago, created a question with more than 1,000 views. For Obtain List Of Small Peptides With Nmr Structure In Tfe And H20
Popular Question 5.2 years ago, created a question with more than 1,000 views. For Software to determine whether genes are related to cancer
Popular Question 5.2 years ago, created a question with more than 1,000 views. For Construct DAG network from DESEQ2 DEGs

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