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Showing :
tools
1
vote
3
replies
639
views
Tool:
retroSeeker: discovering a large set of retrotransposons in humans and any species
Mobile-element
Evolution
Retrotransposon
3 months ago by
lsp03yjh
▴ 860
1
vote
1
reply
520
views
Tool:
trackBrowser: Visualization of sequencing data within a given genome region
RNA
browser
modification
updated 17 months ago by
Alex Reynolds
35k • written 17 months ago by
lsp03yjh
▴ 860
3
votes
1
reply
846
views
Tool:
The Encyclopedia of RNA Epitranscriptome : decoding the mechanisms and functions of diverse RNA modifications
m6A
m1A
m5C
modification
epitranscriptome
18 months ago by
lsp03yjh
▴ 860
8
votes
10
replies
7.1k
views
7 follow
Tool:
Transcription Factor Binding Sites, Motifs and Expression Profiles from ~10200 ChIP-seq and ~20000 RNA-seq samples
ChIP-Seq
transcription-factor
miRNA
lncRNA
updated 12 months ago by
Ram
43k • written 7.5 years ago by
lsp03yjh
▴ 860
7
votes
4
replies
4.5k
views
Tool:
RNA Motifs and CLIP-seq database from PAR-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP, hiCLIP and uvCLIP
iCLIP
PAR-CLIP
HITS-CLIP
eCLIP
updated 10 months ago by
Ram
43k • written 5.6 years ago by
lsp03yjh
▴ 860
11
votes
7
replies
6.1k
views
Tool:
RNA Modification Database and Epitranscriptome Sequencing Data
Epitranscriptome
m5C
m6A
RNA-modification
m1A
updated 19 months ago by
Ram
43k • written 8.5 years ago by
lsp03yjh
▴ 860
4
votes
3
replies
1.9k
views
Tool:
Deciphering LncRNA-Target, NcRNA-Target, Pseudogene-Target and mRNA-Target Interactions from RNA Interactome Sequencing Data
lncRNA
interactome
miRNA
RNA-Interactome
updated 10 months ago by
Ram
43k • written 5.4 years ago by
lsp03yjh
▴ 860
6
votes
0
replies
4.3k
views
Tool:
Discovering protein-lncRNA interactions from large-scale CLIP-Seq and TCGA Cancer datasets
cancer
CLIP-Seq
RBP
lncRNA
RNA-Seq
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
lsp03yjh
▴ 860
22
votes
22
replies
18k
views
Tool:
Pan-Cancer Analysis And Networks Of LncRNAs, MiRNAs, circRNAs, CeRNAs And RNA-Binding Proteins From TCGA 32 Cancer Types and CLIP-seq data
cancer
TCGA
RNA-Binding-Proteins
miRNA
lncRNA
updated 19 months ago by
Ram
43k • written 10.2 years ago by
lsp03yjh
▴ 860
5
votes
7
replies
3.6k
views
Tool:
CircTools: Softwares for Discovering circRNA-microRNA Interactions from CLIP-Seq Datasets
circRNA
CLIP-seq
microRNA
RNA-seq
Interactome
updated 10 months ago by
Ram
43k • written 6.0 years ago by
lsp03yjh
▴ 860
3
votes
0
replies
2.4k
views
Tool:
Decode the Map of RNA Modifications from Epitranscriptome Sequencing Data
m5C
m1A
pseudouridine
SNP
m6A
updated 10 months ago by
Ram
43k • written 6.7 years ago by
lsp03yjh
▴ 860
2
votes
1
reply
3.8k
views
Tool:
oncoNcRNA: Exploring the lncRNAs and miRNAs with Oncogenic Potentials from TCGA and CCLE cancer samples
tcga
ccle
miRNA
cancer
lncRNA
updated 10 months ago by
Ram
43k • written 7.2 years ago by
lsp03yjh
▴ 860
1
vote
4
replies
2.5k
views
Tool:
Human snoRNA atlas from small RNA sequencing data in deepBase
snoRNA
small-RNA-sequencing
expression
cancer
updated 9 months ago by
Ram
43k • written 8.2 years ago by
lsp03yjh
▴ 860
2
votes
0
replies
2.5k
views
Tool:
deepBase: Identification, Expression, Evolution and Function of lncRNAs, circRNAs, sRNAs from deep-sequencing data
circRNA
miRNA
expression
lncRNA
RNA-Seq
updated 9 months ago by
Ram
43k • written 8.4 years ago by
lsp03yjh
▴ 860
2
votes
2
replies
4.6k
views
Tool:
StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
circRNA
RNA-Seq
miRNA
lncrna
degradome-sequencing
updated 19 months ago by
Ram
43k • written 8.9 years ago by
lsp03yjh
▴ 860
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