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Comment: Comment: Problem with survival analysis with gene symbols containing hyphen
7 months ago by nazaninhoseinkhan ▴ 530
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2
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462
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Problem with survival analysis with gene symbols containing hyphen
R Survival-analysis
7 months ago by nazaninhoseinkhan ▴ 530
0
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1
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867
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Comment: Comment: Problem in batch effecting by DeSeq2
23 months ago by nazaninhoseinkhan ▴ 530
2
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3
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867
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Problem in removing batch effect by DeSeq2
DeSeq2 batch-effect
updated 12 weeks ago by 44k • written 23 months ago by ▴ 530
0
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0
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595
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Comment: Comment: Can a pathogenic mutation results in the up-regulation of a gene?
2.4 years ago by nazaninhoseinkhan ▴ 530
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2
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595
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Can a pathogenic mutation results in the up-regulation of a gene?
mutation-up-regulation Pathogenic
2.4 years ago by nazaninhoseinkhan ▴ 530
0
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0
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507
views
"read error; binarycodec in readmode" error in HMMRATAC
BAM HMMRATAC
updated 16 months ago by 44k • written 2.7 years ago by ▴ 530
0
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0
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418
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How can I get plate information for a single cell sequencing dataset
sequencing cell single plate information
2.9 years ago by nazaninhoseinkhan ▴ 530
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1
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1.0k
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Comment: Comment: Why only reverse fatsq file is used for mapping step in single cell RNA sequenci
2.9 years ago by nazaninhoseinkhan ▴ 530
3
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3
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1.0k
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Why only reverse fatsq file is used for mapping step in single cell RNA sequencing analysis?
ScRNA-Seq
updated 18 months ago by 44k • written 2.9 years ago by ▴ 530
0
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1
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588
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EnsemblVEP could not generate any output for a list of frameshift insertion input
Frame_Shift_Insertion EnsemblVEP
3.2 years ago by nazaninhoseinkhan ▴ 530
0
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0
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588
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Answer: Answer: EnsemblVEP could not generate any output for a list of frameshift insertion inpu
3.2 years ago by nazaninhoseinkhan ▴ 530
0
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3
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1.8k
views
conversion of case_ids to file_ids TCGA data
TCGA case_ids conversion
updated 3.2 years ago by • 0 • written 5.4 years ago by ▴ 530
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0
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1.8k
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Comment: Comment: conversion of case_ids to file_ids TCGA data
3.2 years ago by nazaninhoseinkhan ▴ 530
0
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0
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878
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Comment: Comment: Matching the file names with exposure file in TCGA
3.2 years ago by nazaninhoseinkhan ▴ 530
0
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2
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878
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Matching the file names with exposure file in TCGA
FPKM exposure TCGA
updated 18 months ago by 44k • written 3.2 years ago by ▴ 530
7
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18
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6.1k
views
problem in matching the names between file names and patients Id in TCGA
TCGA CNV problem in matching
updated 3.6 years ago by ▴ 30 • written 6.3 years ago by ▴ 530
0
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1
reply
2.2k
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module membership p-value cutoff
wgcna module membership p-value cutoff
updated 3.6 years ago by 20 • written 7.1 years ago by ▴ 530
26
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57
replies
9.9k
views
how to generate CNV plot from VEP results
copy number alteration VEP CNV plot
updated 3.8 years ago by 44k • written 6.0 years ago by ▴ 530
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0
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1.5k
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Comment: C: Methylation-Gene expression correlation
4.1 years ago by nazaninhoseinkhan ▴ 530
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1
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1.5k
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Comment: C: Methylation-Gene expression correlation
4.1 years ago by nazaninhoseinkhan ▴ 530
0
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1
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1.5k
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Comment: C: Methylation-Gene expression correlation
4.1 years ago by nazaninhoseinkhan ▴ 530
1
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6
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1.5k
views
Methylation-Gene expression correlation
DNA methylation Gene expression Correlation
updated 4.1 years ago by 88k • written 4.1 years ago by ▴ 530
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1
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1.6k
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Comment: C: visualizing mutational data using Maftools for reference genome hg19
4.1 years ago by nazaninhoseinkhan ▴ 530
1
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3
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1.6k
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visualizing mutational data using Maftools for reference genome hg19
hg19 visualize Maftools SNV
4.1 years ago by nazaninhoseinkhan ▴ 530
2
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2
replies
2.1k
views
How to find targets for large number of lncRNAs
lncRNA targets
updated 4.3 years ago by 20 • written 8.1 years ago by ▴ 530
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0
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2.9k
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Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
4.4 years ago by nazaninhoseinkhan ▴ 530
0
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1
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2.9k
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Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
4.4 years ago by nazaninhoseinkhan ▴ 530
0
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1
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2.9k
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Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
4.4 years ago by nazaninhoseinkhan ▴ 530
0
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1
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2.9k
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Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
4.4 years ago by nazaninhoseinkhan ▴ 530
0
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1
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2.9k
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Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
4.4 years ago by nazaninhoseinkhan ▴ 530
0
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1
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2.9k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
4.4 years ago by nazaninhoseinkhan ▴ 530
0
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1
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2.9k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
4.4 years ago by nazaninhoseinkhan ▴ 530
1
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18
replies
2.9k
views
Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip"
Negative expression values
updated 4.4 years ago by 88k • written 4.4 years ago by ▴ 530
0
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1
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2.9k
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Comment: A: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
4.4 years ago by nazaninhoseinkhan ▴ 530
1
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0
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846
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Comment: C: several copy number alterations in the same position in an individual
4.4 years ago by nazaninhoseinkhan ▴ 530
2
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3
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846
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several copy number alterations in the same position in an individual
SCNA
updated 4.4 years ago by 44k • written 4.5 years ago by ▴ 530
0
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0
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1.5k
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Comment: C: MUC5AC is not present in deseq2 results
4.5 years ago by nazaninhoseinkhan ▴ 530
0
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1
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1.5k
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Comment: C: MUC5AC is not present in deseq2 results
4.5 years ago by nazaninhoseinkhan ▴ 530
0
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1
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1.5k
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Comment: C: MUC5AC is not present in deseq2 results
4.5 years ago by nazaninhoseinkhan ▴ 530
0
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0
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1.5k
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Comment: C: MUC5AC is not present in deseq2 results
4.5 years ago by nazaninhoseinkhan ▴ 530
0
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0
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1.5k
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Comment: C: MUC5AC is not present in deseq2 results
4.5 years ago by nazaninhoseinkhan ▴ 530
0
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1
reply
1.5k
views
Comment: C: MUC5AC is not present in deseq2 results
4.5 years ago by nazaninhoseinkhan ▴ 530
3
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12
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1.5k
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MUC5AC is not present in deseq2 results
RNA-Seq Deseq2 MUC5AC
4.5 years ago by nazaninhoseinkhan ▴ 530
0
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0
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1.1k
views
How to specify pipelines(muse, mutect,...) in TCGAbiolinks when you want to use hg19?
TCGAbiolinks mutations pipelines selection hg19
4.7 years ago by nazaninhoseinkhan ▴ 530
0
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0
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967
views
Comment: C: What should I do when some probes of a gene is detected as hypomethylated and ot
4.7 years ago by nazaninhoseinkhan ▴ 530
0
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1
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967
views
Comment: C: What should I do when some probes of a gene is detected as hypomethylated and ot
4.8 years ago by nazaninhoseinkhan ▴ 530
2
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3
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967
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What should I do when some probes of a gene is detected as hypomethylated and other probes of the same gene is hypermethylated
DNA methylation hyper-hypomethyaltion same gene
4.8 years ago by nazaninhoseinkhan ▴ 530
0
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0
replies
563
views
problem in finding follow_up samples belong to the same patients in TCGA
TCGA codes follow_up samples
4.8 years ago by nazaninhoseinkhan ▴ 530
0
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1
reply
1.3k
views
Comment: C: No mutations or copy number alterations was detected in stage I of cancer
4.8 years ago by nazaninhoseinkhan ▴ 530
304 results • Page 1 of 7
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