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1
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1
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1.1k
views
UK biobank exome filtering
exome UKbiobank
updated 2.9 years ago by • 0 • written 3.1 years ago by ★ 1.0k
1
vote
1
reply
799
views
Calculating simple allele specific expression for certain variants
ASE RNA-Seq allele specific expression
3.6 years ago by Floris Brenk ★ 1.0k
5
votes
1
reply
2.3k
views
Answer: A: Covariates for eQTL analysis
3.8 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
733
views
BAF and L2R Illumina vs Affymetrix
CNV BAF L2R
3.8 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
3.5k
views
Looking for a whole genome sequencing analysis course
whole genome WGS
updated 4.0 years ago by 20 • written 7.8 years ago by ★ 1.0k
0
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1
reply
3.2k
views
Comment: C: Sizes of Nanopore files and how to store?
4.0 years ago by Floris Brenk ★ 1.0k
6
votes
3
replies
3.2k
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Sizes of Nanopore files and how to store?
Nanopore WGS Long-Read
updated 4.0 years ago by 47k • written 4.0 years ago by ★ 1.0k
2
votes
1
reply
4.2k
views
Answer: A: What's the best way to map CAGE-seq data to the genome?
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.0k
3
votes
1
reply
10k
views
Answer: A: Reformat minimac imputated files to plink file
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.0k
1
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0
replies
3.5k
views
Answer: C: test Tophat ERROR
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 1.0k
0
votes
1
reply
883
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chromosome X and Y GWAS results
chromosome-X GWAS chromosome-Y
updated 16 months ago by 43k • written 4.3 years ago by ★ 1.0k
3
votes
0
replies
40k
views
Comment: C: 1000 Genomes Ld Calculation
updated 4.6 years ago by 43k • written 10.3 years ago by ★ 1.0k
0
votes
1
reply
1.2k
views
Rare variant meta-analyzing tests
meta analyze rare variants
updated 4.9 years ago by • 0 • written 6.2 years ago by ★ 1.0k
1
vote
0
replies
900
views
Epistasis in GWAS loci, examples?
epistasis GWAS R
5.1 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
2.4k
views
Comment: C: Allele Frequency correlation in R
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 1.0k
0
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1
reply
1.9k
views
XHMM GATK exome sequencing deletions genome wide or selected genes ?
xhmm gatk genelist
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 1.0k
1
vote
1
reply
2.5k
views
Comment: C: Remove rows based on duplicates in one column
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 1.0k
0
votes
0
replies
1.9k
views
Comment: C: XHMM GATK exome sequencing deletions genome wide or selected genes ?
updated 5.6 years ago by 43k • written 8.1 years ago by ★ 1.0k
0
votes
1
reply
2.9k
views
Add gene annotation/information to CNV plot in R
cnv plot R
updated 6.4 years ago by ★ 3.8k • written 6.4 years ago by ★ 1.0k
0
votes
0
replies
5.3k
views
Comment: C: ATACseq and HiC sequencing
6.5 years ago by Floris Brenk ★ 1.0k
4
votes
7
replies
5.3k
views
ATACseq and HiC sequencing
atac hic
updated 6.5 years ago by 104k • written 6.5 years ago by ★ 1.0k
0
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1
reply
5.3k
views
Comment: C: ATACseq and HiC sequencing
6.5 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
3.8k
views
Comment: C: How to make a nice mutation overview figure like this?
6.6 years ago by Floris Brenk ★ 1.0k
4
votes
6
replies
3.8k
views
How to make a nice mutation overview figure like this?
R
6.6 years ago by Floris Brenk ★ 1.0k
1
vote
0
replies
3.8k
views
Answer: A: How to make a nice mutation overview figure like this?
6.6 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
1.4k
views
PCA matching controls with cases using genotypes
PCA plink
6.6 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
3.8k
views
Comment: C: How to make a nice mutation overview figure like this?
6.6 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
12k
views
Answer: A: Duplicate ID in bed file
6.7 years ago by Floris Brenk ★ 1.0k
2
votes
1
reply
5.0k
views
Output the call rate of genotypes in plink
plink
updated 6.7 years ago by 10k • written 6.7 years ago by ★ 1.0k
1
vote
1
reply
2.9k
views
Making a vcf file from a subset of regions from gvcf files
gatk vcf
updated 6.7 years ago by ▴ 180 • written 6.7 years ago by ★ 1.0k
0
votes
0
replies
1.7k
views
Comment: C: extract SNPs (rs.....) along with subject ID and pedigree ID in PLINK
6.8 years ago by Floris Brenk ★ 1.0k
12
votes
10
replies
7.9k
views
Imputation of chromosome X using the Michigan imputation server
imputation chrX genotypes
updated 6.8 years ago by ▴ 60 • written 7.0 years ago by ★ 1.0k
1
vote
2
replies
3.0k
views
Gene lists and calculated Ka/Ks ratio per gene
conservation gene-family
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 1.0k
1
vote
0
replies
7.9k
views
Comment: C: Imputation of chromosome X using the Michigan imputation server
6.8 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
1.0k
views
Merge several association signals in a region and use as a phenotype
riskscore gwas
updated 6.8 years ago by 20 • written 6.8 years ago by ★ 1.0k
0
votes
1
reply
2.5k
views
Comment: C: Chromosome Y imputation, any good reference panels?
7.0 years ago by Floris Brenk ★ 1.0k
1
vote
3
replies
2.5k
views
Chromosome Y imputation, any good reference panels?
imputation genotyping chrY
7.0 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
7.9k
views
Comment: C: Imputation of chromosome X using the Michigan imputation server
7.0 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
5.9k
views
Comment: C: Cannot remove subjects from Plink files
7.0 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
7.9k
views
Comment: C: Imputation of chromosome X using the Michigan imputation server
7.0 years ago by Floris Brenk ★ 1.0k
2
votes
0
replies
2.3k
views
Answer: C: finding unique mutations from a multi-sample VCF
7.0 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
1.8k
views
Creating basic phylogenetic trees of human haplotype in R
R phylogenetic haplotype
7.0 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
9.4k
views
Comment: C: How to annotate TTS or TES
7.2 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
1.2k
views
tool for identifying structural variation for DNA
DNA CNV
7.2 years ago by Floris Brenk ★ 1.0k
2
votes
0
replies
2.2k
views
Answer: A: Which SNPs fall within genes and what's their description?
7.2 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
2.1k
views
Comment: C: RNA seq library preparation, PCR cycles
7.2 years ago by Floris Brenk ★ 1.0k
1
vote
8
replies
1.6k
views
Detect chromosome abnormalities in WGS
WGS insertions deletions
updated 7.3 years ago by 20 • written 7.5 years ago by ★ 1.0k
0
votes
1
reply
2.7k
views
Comment: C: vcftools merge files problem
7.3 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
2.7k
views
Comment: C: vcftools merge files problem
7.3 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
1.5k
views
Comment: C: risk value with genetic data
7.4 years ago by Floris Brenk ★ 1.0k
178 results • Page 1 of 4
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