Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.4k
views
Answer: A: continuos covariates in Plink
7.4 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
6.8k
views
Answer: A: How to convert Illumina top/bot SNPs to forward/reverse?
7.4 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
1.5k
views
Comment: C: Ped file contains: 0, -, multibase SNPs, and reverse order genotypes
7.4 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
2.7k
views
Answer: A: How I can convert genotype data in a variety of pedigree formats R
7.4 years ago by Floris Brenk ★ 1.0k
1
vote
1
reply
2.7k
views
Comment: C: How I can convert genotype data in a variety of pedigree formats R
7.4 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
2.4k
views
Comment: C: Dealing with abnormally high coverage regions
7.5 years ago by Floris Brenk ★ 1.0k
1
vote
2
replies
3.4k
views
Filtering imputed vcf files based on probability scores
imputation vcf genotype
updated 7.5 years ago by 20 • written 7.6 years ago by ★ 1.0k
0
votes
1
reply
1.6k
views
Comment: C: Detect chromosome abnormalities in WGS
7.5 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
1.6k
views
Comment: C: Detect chromosome abnormalities in WGS
7.5 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
1.6k
views
Comment: C: Detect chromosome abnormalities in WGS
7.5 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
5.4k
views
Answer: A: PLINK: Compute LD from list of SNPs using 1000 Genomes
7.5 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
2.6k
views
Comment: C: Identification of haplotype blocks
7.5 years ago by Floris Brenk ★ 1.0k
1
vote
1
reply
9.7k
views
Comment: C: How do people know to use at least 30X coverage in WGS?
7.5 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
1.3k
views
Epistasis programs: recommendations and experience
epistasis GWAS
7.5 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
17k
views
Comment: C: Filtering Imputation output: how to filter on a VCF INFO field
7.5 years ago by Floris Brenk ★ 1.0k
1
vote
1
reply
1.9k
views
Haplotypes; phasing, positve seletion and estimating age
haplotypes resequencing
updated 7.5 years ago by 28k • written 7.5 years ago by ★ 1.0k
0
votes
0
replies
2.6k
views
Comment: C: Using PLINK to check SNP variation for a gene
7.6 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
2.2k
views
Comment: C: SNP running using imputed genotype
7.6 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
1.1k
views
Is there more genetic variation at the edges of haplotypes?
haplotype genome
7.6 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
2.2k
views
Comment: C: SNP running using imputed genotype
7.6 years ago by Floris Brenk ★ 1.0k
10
votes
11
replies
10k
views
Reformat minimac imputated files to plink file
imputation minimac mach plink
updated 2.2 years ago by 43k • written 9.9 years ago by ★ 1.0k
1
vote
0
replies
2.1k
views
Comment: C: genotype imputation - alleles
7.6 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
8.6k
views
Comment: C: convert imputed genotypes in VCF file to plink format
7.7 years ago by Floris Brenk ★ 1.0k
1
vote
0
replies
2.3k
views
Comment: C: Convert SNP from A_B format into plink using R package
7.7 years ago by Floris Brenk ★ 1.0k
1
vote
0
replies
2.2k
views
Comment: C: Creating intergenic bam file
7.7 years ago by Floris Brenk ★ 1.0k
3
votes
0
replies
1.6k
views
Answer: A: Population stratification in targeted sequencing?
7.7 years ago by Floris Brenk ★ 1.0k
1
vote
0
replies
5.2k
views
Comment: C: Allele count for SNPs
7.7 years ago by Floris Brenk ★ 1.0k
1
vote
0
replies
6.2k
views
Answer: A: What is the most popular and best tools/pipeline for small RNA seq analysis?
7.7 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
2.8k
views
Comment: C: GTEx genotype data
7.7 years ago by Floris Brenk ★ 1.0k
2
votes
0
replies
1.9k
views
Answer: A: Alzheimer's Disease and Reconstruction of Networks
7.8 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
7.7k
views
Answer: A: Correlation between biological replicates
7.8 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
4.6k
views
Comment: C: R: read.plink Error
7.8 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
4.3k
views
Comment: C: Is it 100% correct to transform SNP data (categorical) to (0, 1, 2) format to ap
7.8 years ago by Floris Brenk ★ 1.0k
1
vote
0
replies
5.9k
views
Comment: C: Plink MDS plot based on IBS to exclude samples
7.8 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
5.9k
views
Comment: C: Plink MDS plot based on IBS to exclude samples
7.8 years ago by Floris Brenk ★ 1.0k
2
votes
1
reply
5.9k
views
Answer: C: Plink MDS plot based on IBS to exclude samples
7.8 years ago by Floris Brenk ★ 1.0k
3
votes
7
replies
2.1k
views
RNA-seq de novo transcript assembly from one gene
RNA-Seq Assembly next-gen
7.9 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
2.1k
views
Comment: C: RNA-seq de novo transcript assembly from one gene
7.9 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
2.1k
views
Comment: C: RNA-seq de novo transcript assembly from one gene
7.9 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
2.1k
views
Comment: C: RNA-seq de novo transcript assembly from one gene
7.9 years ago by Floris Brenk ★ 1.0k
1
vote
1
reply
1.9k
views
Assigning haplotypes to individuals
plink haplotype
7.9 years ago by Floris Brenk ★ 1.0k
1
vote
0
replies
1.9k
views
Answer: A: Assigning haplotypes to individuals
7.9 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
1.8k
views
Comment: C: Coverage/Read Depth per SNP in 1000Genomes
8.0 years ago by Floris Brenk ★ 1.0k
1
vote
2
replies
1.8k
views
Coverage/Read Depth per SNP in 1000Genomes
1000genomes SNP coverage
updated 8.0 years ago by 33k • written 8.0 years ago by ★ 1.0k
0
votes
1
reply
2.4k
views
Answer: A: haplotype association with quantitative traits
8.0 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
2.8k
views
Comment: C: why is this example homozygous 0/0 ?
8.0 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
5.8k
views
Comment: C: Convert Plink's ped file into compound genotype format and 0/1/2 format
8.0 years ago by Floris Brenk ★ 1.0k
0
votes
1
reply
5.8k
views
Comment: C: Convert Plink's ped file into compound genotype format and 0/1/2 format
8.0 years ago by Floris Brenk ★ 1.0k
1
vote
1
reply
5.8k
views
Comment: C: Convert Plink's ped file into compound genotype format and 0/1/2 format
8.0 years ago by Floris Brenk ★ 1.0k
0
votes
0
replies
10k
views
Comment: C: Reformat minimac imputated files to plink file
8.0 years ago by Floris Brenk ★ 1.0k
178 results • Page 2 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6