User: morteza.mahmoudisaber

Reputation:
50
Status:
New User
Location:
Japan
Last seen:
6 months, 3 weeks ago
Joined:
4 years, 6 months ago
Email:
m********************@gmail.com

"Strikings always evolving"

Posts by morteza.mahmoudisaber

<prev • 22 results • page 1 of 3 • next >
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Answer: A: Installation of Chipster on linux platform [long post]
... I have also tried several ways to install it on virtualbox. But there is always some type of error. I doubt if anybody could install chipster properly on local machine recently! ...
written 17 months ago by morteza.mahmoudisaber50
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Answer: A: what is the difference between single end and paired end in sequencing
... This is short answer: https://www.youtube.com/watch?v=hRKes6_dv2k ...
written 18 months ago by morteza.mahmoudisaber50
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Comment: C: Gene regulatory network visualization and annotation
... @ spacemorrissey: Thank you. Reactome is exactly what I needed. ...
written 19 months ago by morteza.mahmoudisaber50
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Comment: C: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
... It would have been good if 'confirming an reply' was also possible as what there is in 'stackoverflow'. It saves the time for readers to find proper answers quickly. ...
written 19 months ago by morteza.mahmoudisaber50
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Gene regulatory network visualization and annotation
... Analyzing Microarray data, I obtained a group of deferentially expressed genes and now I want to identify the gene regulatory networks in which these genes are over-represented, visualize these networks and annotate the networks. As I searched, it seems that Cytoscape is the best software for this ...
visualization cytoscape gene regulatory network written 19 months ago by morteza.mahmoudisaber50 • updated 12 months ago by Biostar ♦♦ 20
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Comment: C: How to identify significant differentially expressed genes and gene regulatory n
... Hi Farbod San, Unfortunately we do not have access to GeneSpring at the moment. I will try the solutions suggested here. Thank you all. ...
written 20 months ago by morteza.mahmoudisaber50
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Comment: C: How to identify significant differentially expressed genes and gene regulatory n
... Hi Farbod, Thank you for the editing and answers. Actually your answer work perfectly for Affymetrix arrays. But I have used agilent microarray that is more comprehensive and accurate than affymetrix but seemingly less popular. ...
written 20 months ago by morteza.mahmoudisaber50
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Comment: C: How to identify significant differentially expressed genes and gene regulatory n
... Thank you @Wouter. This workflow is exactly what I need but the only problem is that it is just for Affymetrix array. I have used agilent microarray: "SurePrint G3 Human Gene Expression v3 8x60K Microarray " I found the package agilp for agilent but it has only the options of: AALoess Normali ...
written 20 months ago by morteza.mahmoudisaber50
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Comment: C: How to identify significant differentially expressed genes and gene regulatory n
... Thank you @Angel for the information. The gene expression analysis was done using Agilent microarray: "SurePrint G3 Human Gene Expression v3 8x60K Microarray " which is not supported by "RobiNA" for DEG analysis. Do you have suggestions for agilent array DGE analysis? ...
written 20 months ago by morteza.mahmoudisaber50
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How to identify significant differentially expressed genes and gene regulatory networks from microarray data.
... I have two sets of gene expression data from agilent microarray (SurePrint G3 Human Gene Expression v3 8x60K Microarray), one for a gene perturbation sample and the other as control. And now I need to identify the significantly differentiated expressed genes and the regulatory networks affected by t ...

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Popular Question 13 months ago, created a question with more than 1,000 views. For Difference between various GRCH 37 releases?
Popular Question 15 months ago, created a question with more than 1,000 views. For Difference between various GRCH 37 releases?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For difference between dash(-) and dot(.) in alignment representation
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Popular Question 2.6 years ago, created a question with more than 1,000 views. For Difference between various GRCH 37 releases?
Scholar 3.8 years ago, created an answer that has been accepted. For A: difference between dash(-) and dot(.) in alignment representation

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