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questions
0
votes
1
reply
522
views
Do we have any disease specific SNVs database?
cancer
mutation
SNP
SNV
database
updated 13 months ago by
Medhat
9.7k • written 13 months ago by
Nemo
• 0
1
vote
2
replies
563
views
How should I interpret FB_Plot in microarray analysis?
microarray
analysis
control
quality
updated 14 months ago by
Ram
43k • written 14 months ago by
Nemo
• 0
0
votes
6
replies
936
views
zero byte files in sratoolkit.3.0.1-ubuntu64
fastq
sra-toolkit
rna-seq
updated 15 months ago by
Ngrin
• 0 • written 15 months ago by
Nemo
• 0
7
votes
4
replies
1.0k
views
Processed RNA seq data publicly available
RNA-seq
updated 14 months ago by
Ram
43k • written 15 months ago by
Nemo
• 0
0
votes
3
replies
716
views
Combining multiple datasets increases the fgsea p-value
enrichment
fgsea
dataset
updated 16 months ago by
mark.ziemann
★ 1.9k • written 16 months ago by
Nemo
• 0
2
votes
3
replies
616
views
What is the default/best practice to map prob IDs to gene IDs
gsea
map
gene
prob
updated 16 months ago by
barslmn
★ 2.1k • written 16 months ago by
Nemo
• 0
2
votes
2
replies
589
views
Question regarding pathways and cell types
signaling
types
cell
pathway
updated 17 months ago by
LauferVA
4.2k • written 17 months ago by
Nemo
• 0
0
votes
3
replies
658
views
predict gain/ loss of function from mutation
protein
mutation
loss
gain
17 months ago by
Nemo
• 0
2
votes
1
reply
517
views
Get variant type from genotype data
type
missense
mutation
nonsense
variant
updated 17 months ago by
Sam
★ 4.7k • written 17 months ago by
Nemo
• 0
0
votes
3
replies
719
views
Htseq-count output file having a high number of __not_aligned
read
htseq-count
human
counts
genome
alignment
updated 19 months ago by
Shred
★ 1.4k • written 19 months ago by
Nemo
• 0
0
votes
0
replies
261
views
The region for RNase P gene in human genome
gene
genome
read
count
19 months ago by
Nemo
• 0
0
votes
1
reply
421
views
How parse collectReadCounts output in r?
CollectReadCounts
r
gatk
rstudio
updated 19 months ago by
Istvan Albert
100k • written 19 months ago by
Nemo
• 0
3
votes
1
reply
471
views
aligning RNA seq data against human genome
variant
calling
rna-seq
alignment
updated 19 months ago by
GenoMax
141k • written 19 months ago by
Nemo
• 0
0
votes
3
replies
731
views
Get distribution of enrichment scores across all permutations in fgsea
enrichment
gsea
pathway
analysis
fgsea
permutation
19 months ago by
Nemo
• 0
0
votes
1
reply
543
views
Normalizing read counts while having multiple group of samples with different conditions
FPKM
normalizing
rna-seq
read-count
alignment
updated 19 months ago by
seidel
11k • written 19 months ago by
Nemo
• 0
0
votes
1
reply
452
views
Normalized read counts with FPKM
Read
FPKM
Normalize
count
RNA-Sequnce
19 months ago by
Nemo
• 0
1
vote
3
replies
557
views
How can I get the number of reads per variant in hisat2?
alignemnt
variant
gatk
covid
hisat2
updated 20 months ago by
Arup Ghosh
3.2k • written 20 months ago by
Nemo
• 0
2
votes
3
replies
725
views
What is chrom and position values in Wuhan-Hu-1 genome data
alignemnt
variant
gatk
covid
hisat2
updated 20 months ago by
GenoMax
141k • written 20 months ago by
Nemo
• 0
1
vote
6
replies
898
views
Why there are variants of covid (delta and omicron) in normal samples?
alignemnt
variant
gatk
covid
hisat2
20 months ago by
Nemo
• 0
0
votes
5
replies
1.1k
views
What is --known-sites in BaseRecalibration of GATK
rna-seq
gatk
variants
site
baserecalibration
updated 20 months ago by
Arup Ghosh
3.2k • written 20 months ago by
Nemo
• 0
2
votes
1
reply
662
views
Can MarkDuplicates of Picard be used for RNA reads?
variants
MarkDuplicates
rna
picard
updated 20 months ago by
LChart
3.9k • written 20 months ago by
Nemo
• 0
1
vote
1
reply
681
views
Problem in MarkDuplicates of picard
variants
MarkDuplicates
picard
rna
updated 20 months ago by
Pierre Lindenbaum
161k • written 20 months ago by
Nemo
• 0
0
votes
3
replies
1.0k
views
using gatk haplotypecaller for variants extraction
variants
gatk
haplotypecaller
rna-seq
updated 20 months ago by
Ram
43k • written 20 months ago by
Nemo
• 0
1
vote
2
replies
640
views
Splice aware or not for RNA sequence data
splice
RNA
hisat2
sequence
alignment
20 months ago by
Nemo
• 0
0
votes
0
replies
345
views
CalibrateDragstrModel - Not enough cases to estimate parameters, using defaults
dragen-os
calibration
gatk
dragen
alignment
20 months ago by
Nemo
• 0
0
votes
0
replies
383
views
Control detected variants for normal samples in dragen
calling
illumina
variants
dragen
alignment
20 months ago by
Nemo
• 0
0
votes
9
replies
1.8k
views
Not producing sam file in hisat2
sam
hisat2
header
alignment
updated 19 months ago by
Ambu Vijayan
▴ 30 • written 20 months ago by
Nemo
• 0
3
votes
6
replies
1.5k
views
Adding @RG header line to bam and sam files in hisat2
bam
hisat2
header
alignment
20 months ago by
Nemo
• 0
1
vote
3
replies
908
views
run bwa on rstudio
fastq
Aligner
bwa
rstudio
index
20 months ago by
Nemo
• 0
0
votes
0
replies
463
views
Why there are samples with different platforms?
GEO
sample
platform
assay
dataset
updated 2.6 years ago by
Ram
43k • written 2.6 years ago by
Nemo
• 0
0
votes
1
reply
598
views
Where is genotype calls in this dataset?
genotype
snps
updated 2.6 years ago by
Lemire
▴ 940 • written 2.6 years ago by
Nemo
• 0
0
votes
3
replies
721
views
Convert decimal numbers of each snp into genotype in r
snp
genotype
updated 9 months ago by
Ram
43k • written 2.6 years ago by
Nemo
• 0
0
votes
1
reply
634
views
SNPs Datasets
Copy
Datasets
SNPs
Diseases
Variation
Number
updated 2.6 years ago by
Kevin Blighe
87k • written 2.6 years ago by
Nemo
• 0
2
votes
9
replies
1.8k
views
How get Genetic Positions of SNPs?
snps
genotype
distance
genetic
position
updated 2.6 years ago by
Sam
★ 4.7k • written 2.6 years ago by
Nemo
• 0
34 results • Page
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