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0
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138
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filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
1 day ago by synat.keam ▴ 100
2
votes
4
replies
273
views
Addmetadata to seurat obj
seurat
9 days ago by synat.keam ▴ 100
0
votes
1
reply
188
views
How plot multiple enrichment plot together
singlecell
updated 15 days ago by ★ 1.9k • written 15 days ago by ▴ 100
0
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2
replies
478
views
Fail to install umap-learn in R
cellchat R
updated 15 days ago by 43k • written 7 weeks ago by ▴ 100
0
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0
replies
137
views
Differentially expressed genes across condition
singlecell
5 weeks ago by synat.keam ▴ 100
0
votes
2
replies
643
views
Filter out doublet and Clustering
single-cell
updated 6 weeks ago by ★ 1.8k • written 5 months ago by ▴ 100
2
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2
replies
216
views
Sample clustering from 10X single cell
clustering
8 weeks ago by synat.keam ▴ 100
8
votes
7
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538
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 9 weeks ago by 43k • written 10 weeks ago by ▴ 100
0
votes
0
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216
views
Seurat Figure legend
single cell
10 weeks ago by synat.keam ▴ 100
14
votes
10
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886
views
How to remove center population from seurat cluster
single-cell
4 months ago by synat.keam ▴ 100
5
votes
3
replies
643
views
Rstudio cloud
R single-cell
4 months ago by synat.keam ▴ 100
3
votes
2
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771
views
Should I scale all genes in single cell Seurat?
singlecell
4 months ago by synat.keam ▴ 100
2
votes
2
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2.3k
views
Cellcyclescoring did not work in Seurat V5
singlecell
updated 4 months ago by ★ 1.6k • written 4 months ago by ▴ 100
11
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6
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1.1k
views
6 follow
UMAP or TSNE for single cells?
single-cell
updated 4 months ago by ▴ 40 • written 5 months ago by ▴ 100
3
votes
2
replies
702
views
Running for loop for resolution of Seurat got error: Error: Not an S4 object.
R single seurat cell
updated 5 months ago by 11k • written 5 months ago by ▴ 100
0
votes
3
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461
views
Reproducible seurat clustering
seurat clustering single-cell
updated 5 months ago by 43k • written 5 months ago by ▴ 100
4
votes
2
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689
views
Annoate complex heatmap columns
complexheatmap
updated 5 months ago by 43k • written 6 months ago by ▴ 100
3
votes
6
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1.0k
views
Cluster annotation in single cell
Single-cell
updated 6 months ago by ▴ 200 • written 7 months ago by ▴ 100
0
votes
0
replies
376
views
DotPlot error in Seurat
Seurat single-cell
updated 6 months ago by 43k • written 6 months ago by ▴ 100
6
votes
2
replies
1.4k
views
Picking optimal resolution for single cell in seurat pipeline
single-cell
updated 6 months ago by 43k • written 6 months ago by ▴ 100
3
votes
2
replies
471
views
Feature plot not applicable for RunTSNE object in seurat?
harmony Seurat single-cell
6 months ago by synat.keam ▴ 100
1
vote
3
replies
544
views
comparision of umap single cell
single-cell
6 months ago by synat.keam ▴ 100
3
votes
4
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683
views
Generate a fraction of immune cell between two condition from single cell RNAseq
single-cell
7 months ago by synat.keam ▴ 100
3
votes
1
reply
406
views
Automatic Cluster Annotation to the subsets of immune cells
single-cell
updated 5 months ago by 43k • written 7 months ago by ▴ 100
3
votes
1
reply
534
views
Overlapping cluster/annotation
Single-Cell
updated 7 months ago by 3.9k • written 7 months ago by ▴ 100
0
votes
1
reply
365
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Drawing label around clusters
cells Single
updated 7 months ago by ★ 27k • written 7 months ago by ▴ 100
3
votes
2
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950
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Could not view/find meta.data and Error merging three seurat object
Seurat single-cell
updated 7 months ago by 43k • written 7 months ago by ▴ 100
6
votes
6
replies
842
views
Integration in single cell RNAseq: What does it mean?
Single cell
updated 7 months ago by ▴ 260 • written 7 months ago by ▴ 100
8
votes
2
replies
657
views
Bulk and Single cell TCRSeq analysis
TCRSeq
updated 7 months ago by ★ 3.9k • written 7 months ago by ▴ 100
0
votes
0
replies
326
views
Multi-sample integration analysis of flow cytometry in R
Cytometry R Flow
12 months ago by synat.keam ▴ 100
1
vote
1
reply
907
views
Filter top differentially experssed for pheatmap from DESeq2
DESeq2 pheatmap
updated 19 months ago by 81k • written 19 months ago by ▴ 100
1
vote
2
replies
518
views
Ordering row with high expression at the top rather than the bottom
pheatmap
20 months ago by synat.keam ▴ 100
3
votes
4
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1.3k
views
PlotPCA shows small plot in plot section of R studio
DESeq2 PlotPCA
20 months ago by synat.keam ▴ 100
0
votes
2
replies
1.1k
views
Time course RNA seq with DESEq2
DESeq2
20 months ago by synat.keam ▴ 100
0
votes
2
replies
606
views
Pipeline with HISAT bulk RNA seq alignment
HISTA
20 months ago by synat.keam ▴ 100
6
votes
4
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1.1k
views
Reference genome fasta file
genome Reference
20 months ago by synat.keam ▴ 100
0
votes
2
replies
731
views
Single cell
SingleCell
2.2 years ago by synat.keam ▴ 100
0
votes
0
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687
views
Understanding how to get enrichment score in GSEA software from broad institute
GSEA
23 months ago by synat.keam ▴ 100
3
votes
4
replies
1.5k
views
Filter out genes less than 10 count from DESeq2 does not work
DESeq2
2.2 years ago by synat.keam ▴ 100
5
votes
4
replies
1.0k
views
Hide column label of genes
geneexpression
2.4 years ago by synat.keam ▴ 100
0
votes
0
replies
620
views
How to read WGCNA edge file output to find the hub genes_ GO ontology
WGCNA hubgene
2.4 years ago by synat.keam ▴ 100
3
votes
4
replies
3.6k
views
Treeplot
ClusterProfiler
2.4 years ago by synat.keam ▴ 100
0
votes
6
replies
2.7k
views
Entrez Gene ID
EntrezID ontology GO ClusterProfiler
2.4 years ago by synat.keam ▴ 100
3
votes
4
replies
1.1k
views
Filtering Gene by mean expression
Gene meanExpression Filter
updated 2.4 years ago by ▴ 790 • written 2.4 years ago by ▴ 100
4
votes
3
replies
1.6k
views
filtering most variable genes
RNAseq
updated 2.4 years ago by 14k • written 2.4 years ago by ▴ 100
0
votes
0
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536
views
Finding whether WGCNA module is associated with different categorical treatment conditions
WGCNA
2.4 years ago by synat.keam ▴ 100
3
votes
4
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1.1k
views
Weird WGCNA plot
WGCNA
2.4 years ago by synat.keam ▴ 100
0
votes
0
replies
536
views
Estimating the level of cytokine and chemokine from BulkRNAseq count matrix
Cytokine RNAseq chemokines
2.5 years ago by synat.keam ▴ 100
2
votes
1
reply
1.1k
views
Gene Set Enrichment Analysis, KEGG and over representative analysis
ClusterProfiler
2.5 years ago by synat.keam ▴ 100
0
votes
4
replies
1.6k
views
Understanding the output of Negative Binomial in DESeq2
DESe2 RNASeq
2.6 years ago by synat.keam ▴ 100
51 results • Page 1 of 2
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