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3
votes
4
replies
344
views
Generate a fraction of immune cell between two condition from single cell RNAseq
single-cell
3 days ago by synat.keam ▴ 80
3
votes
1
reply
194
views
Automatic Cluster Annotation to the subsets of immune cells
singlecell
updated 6 days ago by ★ 1.2k • written 6 days ago by ▴ 80
3
votes
1
reply
178
views
Overlapping cluster/annotation
Single-Cell
updated 11 days ago by 3.3k • written 11 days ago by ▴ 80
0
votes
1
reply
171
views
Drawing label around clusters
cells Single
updated 11 days ago by ★ 24k • written 11 days ago by ▴ 80
3
votes
2
replies
267
views
Could not view/find meta.data and Error merging three seurat object
Seurat single-cell
updated 15 days ago by 40k • written 15 days ago by ▴ 80
2
votes
5
replies
343
views
Cluster annotation in single cell
Single-cell
updated 16 days ago by 40k • written 16 days ago by ▴ 80
6
votes
6
replies
416
views
Integration in single cell RNAseq: What does it mean?
Single cell
updated 23 days ago by ▴ 180 • written 23 days ago by ▴ 80
8
votes
2
replies
335
views
Bulk and Single cell TCRSeq analysis
TCRSeq
updated 29 days ago by ★ 3.4k • written 29 days ago by ▴ 80
0
votes
0
replies
220
views
Multi-sample integration analysis of flow cytometry in R
Cytometry R Flow
5 months ago by synat.keam ▴ 80
1
vote
1
reply
662
views
Filter top differentially experssed for pheatmap from DESeq2
DESeq2 pheatmap
updated 12 months ago by 76k • written 12 months ago by ▴ 80
1
vote
2
replies
388
views
Ordering row with high expression at the top rather than the bottom
pheatmap
13 months ago by synat.keam ▴ 80
3
votes
4
replies
959
views
PlotPCA shows small plot in plot section of R studio
DESeq2 PlotPCA
13 months ago by synat.keam ▴ 80
0
votes
2
replies
762
views
Time course RNA seq with DESEq2
DESeq2
13 months ago by synat.keam ▴ 80
0
votes
2
replies
433
views
Pipeline with HISAT bulk RNA seq alignment
HISTA
13 months ago by synat.keam ▴ 80
6
votes
4
replies
764
views
Reference genome fasta file
genome Reference
13 months ago by synat.keam ▴ 80
0
votes
2
replies
597
views
Single cell
SingleCell
19 months ago by synat.keam ▴ 80
0
votes
0
replies
493
views
Understanding how to get enrichment score in GSEA software from broad institute
GSEA
16 months ago by synat.keam ▴ 80
3
votes
4
replies
1.1k
views
Filter out genes less than 10 count from DESeq2 does not work
DESeq2
19 months ago by synat.keam ▴ 80
5
votes
4
replies
817
views
Hide column label of genes
geneexpression
21 months ago by synat.keam ▴ 80
0
votes
0
replies
502
views
How to read WGCNA edge file output to find the hub genes_ GO ontology
WGCNA hubgene
22 months ago by synat.keam ▴ 80
2
votes
4
replies
2.8k
views
Treeplot
ClusterProfiler
22 months ago by synat.keam ▴ 80
0
votes
6
replies
2.2k
views
Entrez Gene ID
EntrezID ontology GO ClusterProfiler
22 months ago by synat.keam ▴ 80
3
votes
4
replies
920
views
Filtering Gene by mean expression
Gene meanExpression Filter
updated 22 months ago by ▴ 760 • written 22 months ago by ▴ 80
4
votes
3
replies
1.2k
views
filtering most variable genes
RNAseq
updated 22 months ago by 13k • written 22 months ago by ▴ 80
0
votes
0
replies
429
views
Finding whether WGCNA module is associated with different categorical treatment conditions
WGCNA
22 months ago by synat.keam ▴ 80
3
votes
4
replies
858
views
Weird WGCNA plot
WGCNA
22 months ago by synat.keam ▴ 80
0
votes
0
replies
428
views
Estimating the level of cytokine and chemokine from BulkRNAseq count matrix
Cytokine RNAseq chemokines
23 months ago by synat.keam ▴ 80
2
votes
1
reply
904
views
Gene Set Enrichment Analysis, KEGG and over representative analysis
ClusterProfiler
23 months ago by synat.keam ▴ 80
0
votes
4
replies
1.2k
views
Understanding the output of Negative Binomial in DESeq2
DESe2 RNASeq
2.0 years ago by synat.keam ▴ 80
0
votes
7
replies
2.1k
views
How to perform gene annotation in kallisto?
Gene kallisto annotation
updated 4 weeks ago by • 0 • written 2.1 years ago by ▴ 80
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