Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
6
votes
8
replies
2.7k
views
7 follow
Cluster annotation in single cell
Single-cell
updated 20 days ago by • 0 • written 20 months ago by ▴ 100
0
votes
1
reply
608
views
monocle 3-- Could not get node in small cluster
monocle3
updated 10 weeks ago by ★ 2.7k • written 12 months ago by ▴ 100
3
votes
4
replies
6.2k
views
Cellcyclescoring did not work in Seurat V5
Seurat single-cell
updated 6 months ago by 6.3k • written 17 months ago by ▴ 100
0
votes
3
replies
762
views
find DEG of monocle 3 object using tradeSeq
tradeSeq
updated 11 months ago by 45k • written 11 months ago by ▴ 100
0
votes
0
replies
462
views
how to read graph_test output of monocle 3
monocle3
12 months ago by synat.keam ▴ 100
0
votes
0
replies
725
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
13 months ago by synat.keam ▴ 100
2
votes
4
replies
763
views
Addmetadata to seurat obj
seurat
13 months ago by synat.keam ▴ 100
0
votes
1
reply
613
views
How plot multiple enrichment plot together
singlecell
updated 13 months ago by ★ 3.0k • written 13 months ago by ▴ 100
3
votes
2
replies
2.5k
views
Fail to install umap-learn in R
cellchat R
updated 13 months ago by 45k • written 14 months ago by ▴ 100
0
votes
0
replies
353
views
Differentially expressed genes across condition
singlecell
14 months ago by synat.keam ▴ 100
0
votes
2
replies
2.3k
views
Filter out doublet and Clustering
single-cell
updated 14 months ago by ★ 1.9k • written 18 months ago by ▴ 100
2
votes
2
replies
559
views
Sample clustering from 10X single cell
clustering
15 months ago by synat.keam ▴ 100
8
votes
7
replies
1.3k
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 15 months ago by 45k • written 15 months ago by ▴ 100
0
votes
0
replies
731
views
Seurat Figure legend
single cell
15 months ago by synat.keam ▴ 100
14
votes
10
replies
2.4k
views
How to remove center population from seurat cluster
single-cell
17 months ago by synat.keam ▴ 100
5
votes
3
replies
1.3k
views
Rstudio cloud
R single-cell
17 months ago by synat.keam ▴ 100
4
votes
2
replies
2.8k
views
Should I scale all genes in single cell Seurat?
singlecell
17 months ago by synat.keam ▴ 100
11
votes
6
replies
2.9k
views
6 follow
UMAP or TSNE for single cells?
single-cell
updated 18 months ago by ▴ 40 • written 18 months ago by ▴ 100
3
votes
2
replies
2.0k
views
Running for loop for resolution of Seurat got error: Error: Not an S4 object.
R single seurat cell
updated 18 months ago by 12k • written 18 months ago by ▴ 100
0
votes
3
replies
911
views
Reproducible seurat clustering
seurat clustering single-cell
updated 18 months ago by 45k • written 18 months ago by ▴ 100
4
votes
2
replies
1.6k
views
Annoate complex heatmap columns
complexheatmap
updated 19 months ago by 45k • written 19 months ago by ▴ 100
0
votes
0
replies
751
views
DotPlot error in Seurat
Seurat single-cell
updated 19 months ago by 45k • written 19 months ago by ▴ 100
10
votes
2
replies
7.0k
views
Picking optimal resolution for single cell in seurat pipeline
single-cell
updated 19 months ago by 45k • written 19 months ago by ▴ 100
3
votes
2
replies
906
views
Feature plot not applicable for RunTSNE object in seurat?
harmony Seurat single-cell
19 months ago by synat.keam ▴ 100
1
vote
3
replies
1.1k
views
comparision of umap single cell
single-cell
19 months ago by synat.keam ▴ 100
3
votes
4
replies
1.3k
views
Generate a fraction of immune cell between two condition from single cell RNAseq
single-cell
20 months ago by synat.keam ▴ 100
3
votes
2
replies
687
views
Automatic Cluster Annotation to the subsets of immune cells
single-cell
updated 5 months ago by • 0 • written 20 months ago by ▴ 100
3
votes
1
reply
857
views
Overlapping cluster/annotation
Single-Cell
updated 20 months ago by 4.9k • written 20 months ago by ▴ 100
0
votes
1
reply
845
views
Drawing label around clusters
cells Single
updated 20 months ago by ★ 29k • written 20 months ago by ▴ 100
3
votes
2
replies
1.9k
views
Could not view/find meta.data and Error merging three seurat object
Seurat single-cell
updated 20 months ago by 45k • written 20 months ago by ▴ 100
6
votes
6
replies
1.6k
views
Integration in single cell RNAseq: What does it mean?
Single cell
updated 20 months ago by ▴ 360 • written 20 months ago by ▴ 100
8
votes
2
replies
1.1k
views
Bulk and Single cell TCRSeq analysis
TCRSeq
updated 21 months ago by ★ 4.6k • written 21 months ago by ▴ 100
0
votes
0
replies
452
views
Multi-sample integration analysis of flow cytometry in R
Cytometry R Flow
2.1 years ago by synat.keam ▴ 100
1
vote
1
reply
1.3k
views
Filter top differentially experssed for pheatmap from DESeq2
DESeq2 pheatmap
updated 2.7 years ago by 88k • written 2.7 years ago by ▴ 100
1
vote
2
replies
805
views
Ordering row with high expression at the top rather than the bottom
pheatmap
2.7 years ago by synat.keam ▴ 100
3
votes
4
replies
2.0k
views
PlotPCA shows small plot in plot section of R studio
DESeq2 PlotPCA
2.7 years ago by synat.keam ▴ 100
0
votes
2
replies
1.4k
views
Time course RNA seq with DESEq2
DESeq2
2.7 years ago by synat.keam ▴ 100
0
votes
2
replies
953
views
Pipeline with HISAT bulk RNA seq alignment
HISTA
2.7 years ago by synat.keam ▴ 100
6
votes
4
replies
1.6k
views
Reference genome fasta file
genome Reference
2.8 years ago by synat.keam ▴ 100
0
votes
2
replies
1.0k
views
Single cell
SingleCell
3.3 years ago by synat.keam ▴ 100
0
votes
1
reply
1.2k
views
Understanding how to get enrichment score in GSEA software from broad institute
GSEA
updated 9 months ago by ★ 4.4k • written 3.3 years ago by ▴ 100
3
votes
4
replies
2.1k
views
Filter out genes less than 10 count from DESeq2 does not work
DESeq2
3.3 years ago by synat.keam ▴ 100
5
votes
4
replies
1.4k
views
Hide column label of genes
geneexpression
3.5 years ago by synat.keam ▴ 100
0
votes
0
replies
779
views
How to read WGCNA edge file output to find the hub genes_ GO ontology
WGCNA hubgene
3.5 years ago by synat.keam ▴ 100
3
votes
4
replies
4.7k
views
Treeplot
ClusterProfiler
3.5 years ago by synat.keam ▴ 100
0
votes
6
replies
3.6k
views
Entrez Gene ID
EntrezID ontology GO ClusterProfiler
3.5 years ago by synat.keam ▴ 100
3
votes
4
replies
1.6k
views
Filtering Gene by mean expression
Gene meanExpression Filter
updated 3.5 years ago by ▴ 810 • written 3.5 years ago by ▴ 100
4
votes
3
replies
2.3k
views
filtering most variable genes
RNAseq
updated 3.5 years ago by 14k • written 3.5 years ago by ▴ 100
0
votes
0
replies
680
views
Finding whether WGCNA module is associated with different categorical treatment conditions
WGCNA
3.5 years ago by synat.keam ▴ 100
3
votes
4
replies
1.4k
views
Weird WGCNA plot
WGCNA
3.5 years ago by synat.keam ▴ 100
54 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6