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654
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How to compare two datasets of proteomic analysis when there are unique and common proteins?
proteomics mass spectrometry protein replication
3.1 years ago by Farah ▴ 80
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1.6k
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Comment: C: How to deal with the issue when STRING database could not find a protein, or ins
3.1 years ago by Farah ▴ 80
2
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2
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1.6k
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How to deal with the issue when STRING database could not find a protein, or instead matched its similar protein?
proteomics STRING interaction network uniprot
updated 3.1 years ago by ▴ 70 • written 3.1 years ago by ▴ 80
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1.5k
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Comment: C: How to write it in R language?
3.2 years ago by Farah ▴ 80
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0
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1.5k
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Comment: C: How to write it in R language?
3.2 years ago by Farah ▴ 80
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1
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1.5k
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Comment: C: How to write it in R language?
3.2 years ago by Farah ▴ 80
0
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1
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1.5k
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Comment: C: How to write it in R language?
3.2 years ago by Farah ▴ 80
4
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11
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1.5k
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How to write it in R language?
R function programming coding
updated 3.2 years ago by ▴ 140 • written 3.2 years ago by ▴ 80
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0
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1.5k
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Comment: C: How to write it in R language?
3.2 years ago by Farah ▴ 80
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0
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1.1k
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What is the criteria for defining a CRAPome cut-off score for filtering proteomics datasets?
crapome proteomics filtering cut-off score
3.2 years ago by Farah ▴ 80
0
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0
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529
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What is the number of spectra in a mass spectrometry dataset containing list of proteins?
proteomics Mass spectrometry spectra MS spectra
3.2 years ago by Farah ▴ 80
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1
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1.1k
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What is the most efficient way of discovering bait-prey interaction networks and mapping biological process relationships within a network?
cytoscape proteomics interaction networks ClueGO
updated 3.3 years ago by ▴ 620 • written 3.3 years ago by ▴ 80
1
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1
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2.0k
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Which tool for clustering (sub-networking) of protein-protein interaction networks based on the Gene Ontology Biological Process of proteins?
cytoscape clustering Gene Ontology sub-network
updated 3.4 years ago by ▴ 620 • written 3.4 years ago by ▴ 80
4
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4
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1.8k
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Ensemble of Gene Set Enrichment Analyses (EGSEA) for count matrix generated by DESeq2 and edgeR packages
RNA-Seq EGSEA GSEA DESeq2 edgeR
updated 4.1 years ago by 20 • written 4.7 years ago by ▴ 80
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746
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Comment: C: How to detect novel proteins and non-annotated proteins from a list of MS protei
4.2 years ago by Farah ▴ 80
0
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2
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746
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How to detect novel proteins and non-annotated proteins from a list of MS proteins?
mass spectrometry proteomics novel proteins
4.2 years ago by Farah ▴ 80
1
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0
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1.9k
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How to modify bin interval and bars colour in a bar polar chart created by plotly package in R?
plotly R bar_polar_chart Radial_histogram
4.3 years ago by Farah ▴ 80
0
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0
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1.3k
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Comment: C: How to modify the nodes features in Gradient1 style in Cytoscape?
4.3 years ago by Farah ▴ 80
0
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0
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1.1k
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How to make a quarter circle polar plot using ggplot2?
ggplot2 coord_polar R quarter-circle-polar-plot
4.3 years ago by Farah ▴ 80
2
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2
replies
1.3k
views
How to modify the nodes features in Gradient1 style in Cytoscape?
Cytoscape String 3D Gradient1
updated 4.4 years ago by ▴ 540 • written 4.4 years ago by ▴ 80
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0
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1.4k
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Comment: C: How to interpret a Stringdb interaction network of a mouse-proteomics dataset wh
4.4 years ago by Farah ▴ 80
1
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2
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1.4k
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How to interpret a Stringdb interaction network of a mouse-proteomics dataset when it is detected only in Homo sapiens organism?
Stringdb interaction proteomics network String
updated 4.4 years ago by 6.5k • written 4.4 years ago by ▴ 80
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0
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4.2k
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Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
4.4 years ago by Farah ▴ 80
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0
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7.8k
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Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
4.4 years ago by Farah ▴ 80
0
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1
reply
7.8k
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Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
4.4 years ago by Farah ▴ 80
0
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1
reply
7.8k
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Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
updated 4.4 years ago by 87k • written 4.4 years ago by ▴ 80
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0
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7.8k
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Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
4.4 years ago by Farah ▴ 80
0
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1
reply
7.8k
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Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
4.4 years ago by Farah ▴ 80
0
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0
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4.2k
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Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
4.4 years ago by Farah ▴ 80
0
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1
reply
7.8k
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Comment: C: DAVID functional Analysis and its visualization of GO terms using Bar plot
4.4 years ago by Farah ▴ 80
12
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7
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4.2k
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Graphical presentation of STRING protein-protein network and gene ontology
STRING DAVID gene-ontology interaction-network
updated 4.4 years ago by ★ 1.3k • written 4.5 years ago by ▴ 80
0
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0
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4.2k
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Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
4.4 years ago by Farah ▴ 80
2
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1
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893
views
protein-protein interaction network
String network interaction
4.4 years ago by Farah ▴ 80
0
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0
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4.2k
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Comment: C: Graphical presentation of STRING protein-protein network and gene ontology
4.4 years ago by Farah ▴ 80
0
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1
reply
14k
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Comment: C: Confusion about FindMarkers(), FindVariableFeatures(), RunTSNE(), and RunUMAP()
4.5 years ago by Farah ▴ 80
16
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8
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14k
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Confusion about FindMarkers(), FindVariableFeatures(), RunTSNE(), and RunUMAP() in seurat package
scRNA-seq kallisto Seurat bustools
updated 13 months ago by 43k • written 4.5 years ago by ▴ 80
0
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0
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3.8k
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Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
4.5 years ago by Farah ▴ 80
0
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1
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3.8k
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Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
4.5 years ago by Farah ▴ 80
0
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1
reply
3.8k
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Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
4.5 years ago by Farah ▴ 80
0
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1
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3.8k
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Comment: C: How to make a loop to run kallisto bus command for so many fastq.gz files at onc
4.5 years ago by Farah ▴ 80
2
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8
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3.8k
views
How to make a loop to run kallisto bus command for so many fastq.gz files at once?
bash kallisto bustools
updated 13 months ago by 43k • written 4.5 years ago by ▴ 80
0
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0
replies
3.7k
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Comment: C: How to install bamtofastq utility in my terminal?
4.5 years ago by Farah ▴ 80
0
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1
reply
3.7k
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Comment: C: How to install bamtofastq utility in my terminal?
4.5 years ago by Farah ▴ 80
0
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1
reply
3.7k
views
Comment: C: How to install bamtofastq utility in my terminal?
4.5 years ago by Farah ▴ 80
3
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6
replies
3.7k
views
How to install bamtofastq utility in my terminal?
kallisto bamtofastq bustools
updated 13 months ago by 43k • written 4.5 years ago by ▴ 80
0
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0
replies
1.2k
views
Comment: C: Is "Attribute Circle Layout" of a protein-protein network standard and acceptabl
4.5 years ago by Farah ▴ 80
3
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6
replies
1.2k
views
Is "Attribute Circle Layout" of a protein-protein network standard and acceptable for a good publication?
cytoscape network interaction
updated 4.5 years ago by ▴ 620 • written 4.6 years ago by ▴ 80
0
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0
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2.5k
views
Comment: C: Kallisto | bustools workflow for fastq with R1 and R2 (forward and reverse)?
4.6 years ago by Farah ▴ 80
1
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7
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2.5k
views
Kallisto | bustools workflow for fastq with R1 and R2 (forward and reverse)?
scRNA-seq Kallisto bustools
updated 13 months ago by 43k • written 4.6 years ago by ▴ 80
0
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1
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2.5k
views
Comment: C: How to use Kallisto | bustools workflow for fastq files where each sample has tw
4.6 years ago by Farah ▴ 80
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